Non-Coding RNA Search

Thy1-THY010039G02

Sequence:


               
               CATAATACCGTATTAAGAGCTTGGGGTGAGACAGACCAGACTTGAAATCCAGCTACATTA
CCCTCAGAAATGTGTAAAGTTAAGTTTAACCTCCCAGAGCTACAGTTGCCTTATCTGTAA
AGTGGGAATAAAATGGCTCCTATCTCATAGCATTGTTATGAAAACCAAATAGGATATCCT
GCTGGGTTACTAGTAGCTTGTATTTATATTTTCAGTTATGTTTTTGTAGAGGATGCCTTT
GTCTGCTTCTTTTCCTCCTACAACCCATCCTTTTAGAGTATCTAAACACGATCCTCTTCA
CCCAGAGGGCCCCAGTCAGGTCCTGCAGATGGGTTTGGTGGGGATGGAGAGGTTGTGTGT
GTGTGTGTGTGTGTGTGTTTGCGTGTGTGTTTGCACGCACTCGCATCCCTGCTTGCCTCG
AGAAAGTGGATAGAGCTCCAGGGTTCCTCACCTGCTGCTCACTCACCTAGAGCTGCCCCC
TGATGGTGCTAAGGGCTATGGAGCCCCCTCCTGGCTGTACCTTTGGCTGCACTGCCCTCT
CCCAGCGGTGCCCCTTGGCTGTGCTCTTCTAATGCTCACATTTGTCTTGCAGCCTCTTGC
TCCAGTGAGGAAAGGCTTGTGGCCTGGGCCAGCCTGGGGCTCCAGTCAGGGTTAGCCCAA
GCTCAGTGGAGCCCTCCCTTACCCTGGTGGTGGCCTCTGCTAACAGTGGTGCTCCCTGTA
AGTGAGCTGCCCCTGAGAGCAAGATGTCACCAGCAGTCCCTTGGCTTGGGACTTGGGGGG
TGGGGCGCTCTCAGGGCACCAGCTCTGCCTGCCTGTCAGTCTGAGCCTTGTCTTGGATTT
CCTAAGGGACACATCCTGGCTTGAGAGCTGGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAATACCGTATTAAGAGCTTGGGGTGAGACAGACCAGACTTGAAATCCAGCTACATTA
CCCTCAGAAATGTGTAAAGTTAAGTTTAACCTCCCAGAGCTACAGTTGCCTTATCTGTAA
AGTGGGAATAAAATGGCTCCTATCTCATAGCATTGTTATGAAAACCAAATAGGATATCCT
GCTGGGTTACTAGTAGCTTGTATTTATATTTTCAGTTATGTTTTTGTAGAGGATGCCTTT
GTCTGCTTCTTTTCCTCCTACAACCCATCCTTTTAGAGTATCTAAACACGATCCTCTTCA
CCCAGAGGGCCCCAGTCAGGTCCTGCAGATGGGTTTGGTGGGGATGGAGAGGTTGTGTGT
GTGTGTGTGTGTGTGTGTTTGCGTGTGTGTTTGCACGCACTCGCATCCCTGCTTGCCTCG
AGAAAGTGGATAGAGCTCCAGGGTTCCTCACCTGCTGCTCACTCACCTAGAGCTGCCCCC
TGATGGTGCTAAGGGCTATGGAGCCCCCTCCTGGCTGTACCTTTGGCTGCACTGCCCTCT
CCCAGCGGTGCCCCTTGGCTGTGCTCTTCTAATGCTCACATTTGTCTTGCAGCCTCTTGC
TCCAGTGAGGAAAGGCTTGTGGCCTGGGCCAGCCTGGGGCTCCAGTCAGGGTTAGCCCAA
GCTCAGTGGAGCCCTCCCTTACCCTGGTGGTGGCCTCTGCTAACAGTGGTGCTCCCTGTA
AGTGAGCTGCCCCTGAGAGCAAGATGTCACCAGCAGTCCCTTGGCTTGGGACTTGGGGGG
TGGGGCGCTCTCAGGGCACCAGCTCTGCCTGCCTGTCAGTCTGAGCCTTGTCTTGGATTT
CCTAAGGGACACATCCTGGCTTGAGAGCTGGTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               290-409, - strand, RNAz p=0.999994
               

               
               582-690, - strand, RNAz p=0.939301

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-409, - strand, RNAz p=0.999994
               

               
               582-690, - strand, RNAz p=0.939301

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               372-487, + strand, RNAmicro p=0.948654

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               372-487, + strand, RNAmicro p=0.948654

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-874, gnl|bosTau2|chr28 (22956294-22955452)
               

               
               1-874, gnl|Hg17|chr10 (75248892-75248003)
               

               
               1-874, gnl|Mm7|chr14 (18397555-18396612)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-874, gnl|bosTau2|chr28 (22956294-22955452)
               

               
               1-874, gnl|Hg17|chr10 (75248892-75248003)
               

               
               1-874, gnl|Mm7|chr14 (18397555-18396612)

	290-409, - strand, RNAz p=0.999994
	582-690, - strand, RNAz p=0.939301

	1-874, gnl\|bosTau2\|chr28 (22956294-22955452)
	1-874, gnl\|Hg17\|chr10 (75248892-75248003)
	1-874, gnl\|Mm7\|chr14 (18397555-18396612)