Non-Coding RNA Search

Thy1-THY010039H12

Sequence:


               
               TTTTTTAAAGATGGCCGGAGCGGCGGCGGCGGTGGCCGCGGGAGCAGCAGCTGGAGCCGC
CGCGGCAGCCGTGTCGGTGGCGGCTCCCGGCCGGGCCTCGGCTCCCCCGCCGCCCCCGCC
GGTGTACTGTGTGTGCCGGCGGCCGTACGACGTGAACCGTTTCATGATCGAGTGCGATAT
CTGCAAGGACTGGTTCCACGGCAGCTGTGTTGGAGTAGAAGAACATCATGCTGTTGACAT
TGACCTGTATCACTGTCCCAACTGTGCAGTTCTACATGGTTCCTCATTGATGAAAAAGAG
GAGGAACTGGCACAGGCACGACTACACGGAGGTTGATGATGGTTCCAAACCCGTGCAGGC
TGGAACTAGAACTTTCGTGAAGGAATTACGTTCTCGAGTCTTCCCAAGGTATGGAACCCT
CTTATGACCAACGACATTTAAGAATGTTGCCTATTGAAATGGCGTTATCTAAAGCAGTGT
TTTCAAGCTTTGGTTTGCAAGCCATTATTGTTCTCCATCAGCTTTTTACTTGTCGAAAAT
GAAATAGAATAGAAAATATTGGTACAATGAAGTTAATAGGCGTAAGCAAGCATAGTTGCA
TGGAACTTTTGTTACATGTATGTGTGCTGGGTCGCTGTGTAAAAATGTATTTCGTAACTT
CGGGCCCCAGTCCAAAAAGTTTCAAGCACACTAATCTAAGGCAGTTATTCTCGTACTTTG
TTCCTTACGTGATGCAGCTGCTGCTGCTTTTCCATCTTCATCCCACCTACTCCTGTTTTC
TCATTATGTTGTTTTCCTATCTGTCTCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTAAAGATGGCCGGAGCGGCGGCGGCGGTGGCCGCGGGAGCAGCAGCTGGAGCCGC
CGCGGCAGCCGTGTCGGTGGCGGCTCCCGGCCGGGCCTCGGCTCCCCCGCCGCCCCCGCC
GGTGTACTGTGTGTGCCGGCGGCCGTACGACGTGAACCGTTTCATGATCGAGTGCGATAT
CTGCAAGGACTGGTTCCACGGCAGCTGTGTTGGAGTAGAAGAACATCATGCTGTTGACAT
TGACCTGTATCACTGTCCCAACTGTGCAGTTCTACATGGTTCCTCATTGATGAAAAAGAG
GAGGAACTGGCACAGGCACGACTACACGGAGGTTGATGATGGTTCCAAACCCGTGCAGGC
TGGAACTAGAACTTTCGTGAAGGAATTACGTTCTCGAGTCTTCCCAAGGTATGGAACCCT
CTTATGACCAACGACATTTAAGAATGTTGCCTATTGAAATGGCGTTATCTAAAGCAGTGT
TTTCAAGCTTTGGTTTGCAAGCCATTATTGTTCTCCATCAGCTTTTTACTTGTCGAAAAT
GAAATAGAATAGAAAATATTGGTACAATGAAGTTAATAGGCGTAAGCAAGCATAGTTGCA
TGGAACTTTTGTTACATGTATGTGTGCTGGGTCGCTGTGTAAAAATGTATTTCGTAACTT
CGGGCCCCAGTCCAAAAAGTTTCAAGCACACTAATCTAAGGCAGTTATTCTCGTACTTTG
TTCCTTACGTGATGCAGCTGCTGCTGCTTTTCCATCTTCATCCCACCTACTCCTGTTTTC
TCATTATGTTGTTTTCCTATCTGTCTCCACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57210100|emb|CAI42863.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57210100|emb|CAI42863.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               331-441, + strand, RNAz p=0.681903

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-441, + strand, RNAz p=0.681903

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               291-812, gnl|bosTau2|chr4 (57216558-57216034)
               

               
               291-812, gnl|Hg17|chr7 (139286640-139286097)
               

               
               291-812, gnl|Mm7|chr6 (39106405-39105918)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-812, gnl|bosTau2|chr4 (57216558-57216034)
               

               
               291-812, gnl|Hg17|chr7 (139286640-139286097)
               

               
               291-812, gnl|Mm7|chr6 (39106405-39105918)

	291-812, gnl\|bosTau2\|chr4 (57216558-57216034)
	291-812, gnl\|Hg17\|chr7 (139286640-139286097)
	291-812, gnl\|Mm7\|chr6 (39106405-39105918)