Non-Coding RNA Search

Thy1-THY010044H06

Sequence:


               
               TTCTGAGGAGGCATTTGGTGCAGCTAGTAATCATAATTCTTATTAAAACTGGTGACGTCT
GGCCCCCAGGGTGTAGCCAGGCTCAAATTGATGCTTTTTGCCGCCTGATCACCAGCATGG
CCTAAGTGCTCATTATATTGTAGAGAGGGCCTTTGCAGCTCTCATTAGATTTGACAGGAA
TTCTCTCTAGGGGGAAACTGGGCATTAGTGAGACTCCTGACAGGCTGAAATTAGTCCTGC
TTTATGGCTTATAACCAAATGCTAGCAAGGCATCATCAGGGGACACAAAAAATTGTCATT
TCTGACAACATCTTTGTTACTGCAAAAAAAAAAAAAAAAAAAAAAGCAGTGATGGGGAAA
CTTTAATGTTGTTAAGATTTGTCTCTAATGTGACGACCCGCTCTACTCCCCACCTTTCAG
CGGCTTTGTCGGAGTGAGTTTGAGAGATTTCAGTGTCAAATCTCACCACTGACTTTTCCG
GCTGGAAGTTTTAAAGTGGAAGTGCGTCCACATCAAGAATGGTATAATTGTGGTTTCCTT
ACTTGGTTTGGTGCCCACAGTCCGTGTTTATGTTGTGTCAACACTTCCTGATAAGCCTTC
CTCTTACTTTCTCTGCTCCCATTTGTGGCTGGTTACCCAAAAGTCAACGAAATCAGGATG
GTAATGGATGTTGAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGAGGAGGCATTTGGTGCAGCTAGTAATCATAATTCTTATTAAAACTGGTGACGTCT
GGCCCCCAGGGTGTAGCCAGGCTCAAATTGATGCTTTTTGCCGCCTGATCACCAGCATGG
CCTAAGTGCTCATTATATTGTAGAGAGGGCCTTTGCAGCTCTCATTAGATTTGACAGGAA
TTCTCTCTAGGGGGAAACTGGGCATTAGTGAGACTCCTGACAGGCTGAAATTAGTCCTGC
TTTATGGCTTATAACCAAATGCTAGCAAGGCATCATCAGGGGACACAAAAAATTGTCATT
TCTGACAACATCTTTGTTACTGCAAAAAAAAAAAAAAAAAAAAAAGCAGTGATGGGGAAA
CTTTAATGTTGTTAAGATTTGTCTCTAATGTGACGACCCGCTCTACTCCCCACCTTTCAG
CGGCTTTGTCGGAGTGAGTTTGAGAGATTTCAGTGTCAAATCTCACCACTGACTTTTCCG
GCTGGAAGTTTTAAAGTGGAAGTGCGTCCACATCAAGAATGGTATAATTGTGGTTTCCTT
ACTTGGTTTGGTGCCCACAGTCCGTGTTTATGTTGTGTCAACACTTCCTGATAAGCCTTC
CTCTTACTTTCTCTGCTCCCATTTGTGGCTGGTTACCCAAAAGTCAACGAAATCAGGATG
GTAATGGATGTTGAAATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.929733
               

               
               201-382, + strand, RNAz p=0.981034

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.929733
               

               
               201-382, + strand, RNAz p=0.981034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-678, gnl|bosTau2|chr13 (35639758-35639083)
               

               
               1-678, gnl|Hg17|chr9 (81528028-81527342)
               

               
               1-678, gnl|Mm7|chr4 (71629527-71628888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-678, gnl|bosTau2|chr13 (35639758-35639083)
               

               
               1-678, gnl|Hg17|chr9 (81528028-81527342)
               

               
               1-678, gnl|Mm7|chr4 (71629527-71628888)

	1-120, - strand, RNAz p=0.929733
	201-382, + strand, RNAz p=0.981034

	1-678, gnl\|bosTau2\|chr13 (35639758-35639083)
	1-678, gnl\|Hg17\|chr9 (81528028-81527342)
	1-678, gnl\|Mm7\|chr4 (71629527-71628888)