Non-Coding RNA Search

Thy1-THY010046G07

Sequence:


               
               TGGAGGAAATGATGGATTTTAAATAAGAAAGGAGTCCTAGGCCGAGTGGAAATTAAGCTC
TCTTTCCTATTATAGGGAATGAAAAGCCCAAATCTAGGAACCTTGGACCTGAAGTCCCTT
GCACCTCATCACTGCTGCTTCCAGGGAAATCCTTGTGTGTGTGAGGGAGAAAGGGGAGGG
GCAGACAGTCCAGGCCCTCAGGTGGGTCAGGTTTAGCTTCATGGAGCCAGTTAATGACAG
CAGCCAAGTTCTGCCCTCTGCATCCATGGGAACACAGCCCCTAACCACCCACATCTCACC
TCCCCCTCTTTATTCCTTTCCCCAAACCACACAAGAGATACCATACCCCCTTTCCAGAAC
CAGACTGCCAAGGTCATAGCCGAAACCTTAGGAAGCGGCGCTAAGGATTAAAATCTCTTT
GTACTTGAGAGGCACTAGGAAAATGAGAAATTCAGAATTTGAGGTTCATTTGCAGGTGCA
GTCCCCTTCCTTCTCTTGAATGGCTGCTGAATTGCTCGAGAACTTTTGCACGGTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGAAATGATGGATTTTAAATAAGAAAGGAGTCCTAGGCCGAGTGGAAATTAAGCTC
TCTTTCCTATTATAGGGAATGAAAAGCCCAAATCTAGGAACCTTGGACCTGAAGTCCCTT
GCACCTCATCACTGCTGCTTCCAGGGAAATCCTTGTGTGTGTGAGGGAGAAAGGGGAGGG
GCAGACAGTCCAGGCCCTCAGGTGGGTCAGGTTTAGCTTCATGGAGCCAGTTAATGACAG
CAGCCAAGTTCTGCCCTCTGCATCCATGGGAACACAGCCCCTAACCACCCACATCTCACC
TCCCCCTCTTTATTCCTTTCCCCAAACCACACAAGAGATACCATACCCCCTTTCCAGAAC
CAGACTGCCAAGGTCATAGCCGAAACCTTAGGAAGCGGCGCTAAGGATTAAAATCTCTTT
GTACTTGAGAGGCACTAGGAAAATGAGAAATTCAGAATTTGAGGTTCATTTGCAGGTGCA
GTCCCCTTCCTTCTCTTGAATGGCTGCTGAATTGCTCGAGAACTTTTGCACGGTAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               173-290, + strand, RNAz p=0.997474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-290, + strand, RNAz p=0.997474

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               141-537, gnl|bosTau2|chr29 (36788904-36789307)
               

               
               141-537, gnl|canFam2|chr18 (53663029-53662638)
               

               
               141-537, gnl|dasNov1|scaffold_21579 (47176-46811)
               

               
               141-537, gnl|hg17|chr11 (66247175-66247501)
               

               
               141-537, gnl|Hg17|chr11 (66247623-66247267)
               

               
               141-537, gnl|mm7|chr19 (4612312-4611957)
               

               
               141-537, gnl|panTro1|chr9 (67497637-67497968)
               

               
               141-537, gnl|rheMac2|chr14 (7735685-7735334)
               

               
               141-537, gnl|rn3|chr1 (207477321-207476984)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-537, gnl|bosTau2|chr29 (36788904-36789307)
               

               
               141-537, gnl|canFam2|chr18 (53663029-53662638)
               

               
               141-537, gnl|dasNov1|scaffold_21579 (47176-46811)
               

               
               141-537, gnl|hg17|chr11 (66247175-66247501)
               

               
               141-537, gnl|Hg17|chr11 (66247623-66247267)
               

               
               141-537, gnl|mm7|chr19 (4612312-4611957)
               

               
               141-537, gnl|panTro1|chr9 (67497637-67497968)
               

               
               141-537, gnl|rheMac2|chr14 (7735685-7735334)
               

               
               141-537, gnl|rn3|chr1 (207477321-207476984)

	141-537, gnl\|bosTau2\|chr29 (36788904-36789307)
	141-537, gnl\|canFam2\|chr18 (53663029-53662638)
	141-537, gnl\|dasNov1\|scaffold_21579 (47176-46811)
	141-537, gnl\|hg17\|chr11 (66247175-66247501)
	141-537, gnl\|Hg17\|chr11 (66247623-66247267)
	141-537, gnl\|mm7\|chr19 (4612312-4611957)
	141-537, gnl\|panTro1\|chr9 (67497637-67497968)
	141-537, gnl\|rheMac2\|chr14 (7735685-7735334)
	141-537, gnl\|rn3\|chr1 (207477321-207476984)