Non-Coding RNA Search

Thy1-THY010057D01

Sequence:


               
               TTAACGTGACATTTTAAGTAGACCTGTTTCCAAACAGTGAGGTATTCACAGTGACTGTTT
TCGGATGGAGAAAAACAGTTGAACACACTGTGCTCAGCAGAAACACAAAAGCTGCCATGG
ATAAAGGGATCGAATTAATCTACCTTTGCCCCACCACCGCAGAGGGGCAGTCAGACCCAG
GTGCCCAAAGAGCCCCATCAGAGTCCCCTGAGTCAAGAAGCTCCCAGGGCCTTGCTTAAT
CTAGCAGAGTGTCAGAGGCACTGAGGCAAGAGGGAATGACTCCCGGCTCAAATGTCACAG
AGCATCGTCACTGAGGAAGGCCACCCCAGGGGCGACCTCCCCGTATGTGGTGATCAGTAA
GCCTTGGAGTCTAGCCTGGCTGCAGTCCATCTTTGTGGCAAATCACCAGAAAGTTCTTTG
AATTTCCACAGATTCTGCCCCCCCCCCCGCCACCGCCCCCCAGTGAACCATGGACACACT
GAATATTTAATTAACTGTTCCTCATCCTTGGGGCCTCGCTAACTCTCTGCTTCACACACT
GGCTGGACTTGTGCAGTGAACTTTTCGCGCTTGGCTAAGCATGTTCTGATGTGGCTTAAT
GTAGTTCCTCAGTGTTCACGATGACTAAGAAACGGGCATCCAGCATCACCGCGTTGCACA
TGTGAAAGGGAATCTGACAACTGGGATCATAAACCATCTTACCTTTATTCATTCCAGCCT
TTACTGCTTGCAAATCCTAAGCACTGTGACTTGCCCCATTGGATTACCTGAACAATGGCG
GTATGTTTCAGGTTATTTTTGAACTGTGAGGCACAGAAGACACTTCTTGAAGCTCATTAG
TTCTCTGGTAAATTTTATGATTTCCACATGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACGTGACATTTTAAGTAGACCTGTTTCCAAACAGTGAGGTATTCACAGTGACTGTTT
TCGGATGGAGAAAAACAGTTGAACACACTGTGCTCAGCAGAAACACAAAAGCTGCCATGG
ATAAAGGGATCGAATTAATCTACCTTTGCCCCACCACCGCAGAGGGGCAGTCAGACCCAG
GTGCCCAAAGAGCCCCATCAGAGTCCCCTGAGTCAAGAAGCTCCCAGGGCCTTGCTTAAT
CTAGCAGAGTGTCAGAGGCACTGAGGCAAGAGGGAATGACTCCCGGCTCAAATGTCACAG
AGCATCGTCACTGAGGAAGGCCACCCCAGGGGCGACCTCCCCGTATGTGGTGATCAGTAA
GCCTTGGAGTCTAGCCTGGCTGCAGTCCATCTTTGTGGCAAATCACCAGAAAGTTCTTTG
AATTTCCACAGATTCTGCCCCCCCCCCCGCCACCGCCCCCCAGTGAACCATGGACACACT
GAATATTTAATTAACTGTTCCTCATCCTTGGGGCCTCGCTAACTCTCTGCTTCACACACT
GGCTGGACTTGTGCAGTGAACTTTTCGCGCTTGGCTAAGCATGTTCTGATGTGGCTTAAT
GTAGTTCCTCAGTGTTCACGATGACTAAGAAACGGGCATCCAGCATCACCGCGTTGCACA
TGTGAAAGGGAATCTGACAACTGGGATCATAAACCATCTTACCTTTATTCATTCCAGCCT
TTACTGCTTGCAAATCCTAAGCACTGTGACTTGCCCCATTGGATTACCTGAACAATGGCG
GTATGTTTCAGGTTATTTTTGAACTGTGAGGCACAGAAGACACTTCTTGAAGCTCATTAG
TTCTCTGGTAAATTTTATGATTTCCACATGTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               271-429, - strand, RNAz p=0.842338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-429, - strand, RNAz p=0.842338

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-442, gnl|bosTau2|chr10 (37870480-37870924)
               

               
               1-442, gnl|Hg17|chr15 (58873659-58873211)
               


               
               456-819, gnl|bosTau2|chr10 (37870919-37871283)
               

               
               456-819, gnl|Hg17|chr15 (58873216-58872844)
               

               
               456-819, gnl|Mm7|chr9 (69108951-69109310)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-442, gnl|bosTau2|chr10 (37870480-37870924)
               

               
               1-442, gnl|Hg17|chr15 (58873659-58873211)
               


               
               456-819, gnl|bosTau2|chr10 (37870919-37871283)
               

               
               456-819, gnl|Hg17|chr15 (58873216-58872844)
               

               
               456-819, gnl|Mm7|chr9 (69108951-69109310)

	1-442, gnl\|bosTau2\|chr10 (37870480-37870924)
	1-442, gnl\|Hg17\|chr15 (58873659-58873211)

	456-819, gnl\|bosTau2\|chr10 (37870919-37871283)
	456-819, gnl\|Hg17\|chr15 (58873216-58872844)
	456-819, gnl\|Mm7\|chr9 (69108951-69109310)