Non-Coding RNA Search

Thy1-THY010059G05

Sequence:


               
               ATACCACCTACCCTCTCGCTTTTGGCTGGGCCAAGCCTCTAGGTGCAGAGACACCTCGGA
AGGGAGCGCTGACCTCACAGGTGAGAAAGTTGGCGAGTAAGGAAGATGCTGTTCCAGATA
AGTGGATCTGGTTGCTCCCAGTGTATTACTCTGCCTTCAAATATGTTACTGAAAAATATT
TGGCAAAGGATTTCTCCATCCAAAAAGAGGACAAAGGAAAAATGGCTAAACAATAATTGG
CATAAGGGAGCTGCATAAATCCTTTCAAGAAGCATGGGTTAAGGACAAACTGGGAAACAA
GGCAGGCGCCATGACCTCAGGCTCAAAGGAGATCATGCATGGAAAGGTAAGGGGCCTGCA
GGGGGATTCTGAGCCAGCCGGCAGGCACCACACAGCCATGCTGCCCAGTGCTGCACTGAA
TGGCCAGCAGTGCGGCCATGGGCAACTGTTTCATCTCTCTGGGCCTCTGCCCTTCCTTAA
AGCTGCAGATGATAAGGCCATCTGAAACCTTTTTAATAGTCCTTCTCTCACTTCAAGCTG
GTGGATGGATCTTTTCTAAAACATGGTCAAATTCTTTAAAAAAAATCATATAGAAAATAC
AAGGTATTGAGTCATCTAGTTTGAAAGGTTAACTGAGACAATGAAGGGTTTGAACCGAGG
AACAGGGACAGAGCCGTTCTACTGAATAAGGGTTCCAGGAGCCACCTGACTGAAGAGGGT
TCCCTTATCAGGGACATTGGAGAACTGCTGTCTATTACACACTCTTCTTAGCATCATCAT
TCCTGCAGAAGTCTCCGAGAAGTCCTGTACTGCAGAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCACCTACCCTCTCGCTTTTGGCTGGGCCAAGCCTCTAGGTGCAGAGACACCTCGGA
AGGGAGCGCTGACCTCACAGGTGAGAAAGTTGGCGAGTAAGGAAGATGCTGTTCCAGATA
AGTGGATCTGGTTGCTCCCAGTGTATTACTCTGCCTTCAAATATGTTACTGAAAAATATT
TGGCAAAGGATTTCTCCATCCAAAAAGAGGACAAAGGAAAAATGGCTAAACAATAATTGG
CATAAGGGAGCTGCATAAATCCTTTCAAGAAGCATGGGTTAAGGACAAACTGGGAAACAA
GGCAGGCGCCATGACCTCAGGCTCAAAGGAGATCATGCATGGAAAGGTAAGGGGCCTGCA
GGGGGATTCTGAGCCAGCCGGCAGGCACCACACAGCCATGCTGCCCAGTGCTGCACTGAA
TGGCCAGCAGTGCGGCCATGGGCAACTGTTTCATCTCTCTGGGCCTCTGCCCTTCCTTAA
AGCTGCAGATGATAAGGCCATCTGAAACCTTTTTAATAGTCCTTCTCTCACTTCAAGCTG
GTGGATGGATCTTTTCTAAAACATGGTCAAATTCTTTAAAAAAAATCATATAGAAAATAC
AAGGTATTGAGTCATCTAGTTTGAAAGGTTAACTGAGACAATGAAGGGTTTGAACCGAGG
AACAGGGACAGAGCCGTTCTACTGAATAAGGGTTCCAGGAGCCACCTGACTGAAGAGGGT
TCCCTTATCAGGGACATTGGAGAACTGCTGTCTATTACACACTCTTCTTAGCATCATCAT
TCCTGCAGAAGTCTCCGAGAAGTCCTGTACTGCAGAAACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-236, - strand, RNAz p=0.903315
               

               
               357-514, - strand, RNAz p=0.99667

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-236, - strand, RNAz p=0.903315
               

               
               357-514, - strand, RNAz p=0.99667

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-811, gnl|bosTau2|chr20 (27163764-27164611)
               

               
               2-811, gnl|Hg17|chr5 (31803952-31803214)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-811, gnl|bosTau2|chr20 (27163764-27164611)
               

               
               2-811, gnl|Hg17|chr5 (31803952-31803214)

	80-236, - strand, RNAz p=0.903315
	357-514, - strand, RNAz p=0.99667

	2-811, gnl\|bosTau2\|chr20 (27163764-27164611)
	2-811, gnl\|Hg17\|chr5 (31803952-31803214)