Non-Coding RNA Search

Thy1-THY010062A09

Sequence:


               
               GGAAGTGGGCCCTAAAAAGACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAGA
GAGAGAGGTCATGCTGCTGGATCTAGTCATTGCTTTAATTATTGTGTGACCTTGGGCAGG
GACCTGCTTCTTCCTCTGTGCCTCGGTTTCCCCAGCTGCTCAATGAGAGATGGTTTGCAT
GACCACTAAAAGGCCTTTTCGTCCTCTGATGCCTGTCAGGACATTTTCCTCGTGTTTCTA
ACCTCTCTCCCTCTTGCTGCCGGCCAAGGCCACAGTCCCCTCCTCTGTTTGTCCTTTGTG
AGGATGGGGGACAGCTGGTCCCCCGTCCCCTCCCCCCCCAGTAACCTTTTAGCCATAAAT
CCATGCTGAGGCGTCTCTCCACCGGATAAACAGCCCTGATACCTTTTGGCTGCCCTCGTC
CTATTTTCTGCTTGAAGTATCAGAGCCGGGGCCCACTCGGGCCCTCTGCAGCTGCCCAGG
GCCCCAGGAGGGGAACAAGCCTTGGACCAGCAGGGCCCCCACCACCCCCAGGGTGCCAGG
GTGGAGGGCCCCTCCTTGGGCCTCACCACCTCACATTTGGACCCTTATGGCAGCCGCCTC
CCAAGTAAGTCTTCCTGCCACCGGTCTCGCCCCTGCAGTCCATCCTCCACACCAGCTGCC
ACGGGGATCTGGTGAACACATAAATCTGACCACACTGTCAAATGCCCTTGCTCAGAGCTC
TTTGATGAAAACAATAAAATAAAAAATGCCTTTGATGGCTCCCCAACTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTGGGCCCTAAAAAGACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAGA
GAGAGAGGTCATGCTGCTGGATCTAGTCATTGCTTTAATTATTGTGTGACCTTGGGCAGG
GACCTGCTTCTTCCTCTGTGCCTCGGTTTCCCCAGCTGCTCAATGAGAGATGGTTTGCAT
GACCACTAAAAGGCCTTTTCGTCCTCTGATGCCTGTCAGGACATTTTCCTCGTGTTTCTA
ACCTCTCTCCCTCTTGCTGCCGGCCAAGGCCACAGTCCCCTCCTCTGTTTGTCCTTTGTG
AGGATGGGGGACAGCTGGTCCCCCGTCCCCTCCCCCCCCAGTAACCTTTTAGCCATAAAT
CCATGCTGAGGCGTCTCTCCACCGGATAAACAGCCCTGATACCTTTTGGCTGCCCTCGTC
CTATTTTCTGCTTGAAGTATCAGAGCCGGGGCCCACTCGGGCCCTCTGCAGCTGCCCAGG
GCCCCAGGAGGGGAACAAGCCTTGGACCAGCAGGGCCCCCACCACCCCCAGGGTGCCAGG
GTGGAGGGCCCCTCCTTGGGCCTCACCACCTCACATTTGGACCCTTATGGCAGCCGCCTC
CCAAGTAAGTCTTCCTGCCACCGGTCTCGCCCCTGCAGTCCATCCTCCACACCAGCTGCC
ACGGGGATCTGGTGAACACATAAATCTGACCACACTGTCAAATGCCCTTGCTCAGAGCTC
TTTGATGAAAACAATAAAATAAAAAATGCCTTTGATGGCTCCCCAACTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               263-648, - strand, RNAz p=0.982526

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-648, - strand, RNAz p=0.982526

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               561-654, - strand, RNAmicro p=0.985135

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               561-654, - strand, RNAmicro p=0.985135

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-771, gnl|bosTau2|chr13 (46577660-46576976)
               

               
               94-771, gnl|Hg17|chr20 (33022636-33023302)
               

               
               94-771, gnl|Mm7|chr2 (155347829-155348524)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-771, gnl|bosTau2|chr13 (46577660-46576976)
               

               
               94-771, gnl|Hg17|chr20 (33022636-33023302)
               

               
               94-771, gnl|Mm7|chr2 (155347829-155348524)

	94-771, gnl\|bosTau2\|chr13 (46577660-46576976)
	94-771, gnl\|Hg17\|chr20 (33022636-33023302)
	94-771, gnl\|Mm7\|chr2 (155347829-155348524)