Non-Coding RNA Search

Thy1-THY010062D10

Sequence:


               
               TTTACGTATTTCAACATCACAGTGACTGGAAGGGGTAGGGCAGGAACAGACATTTGGCAT
TATTGATTATACCAGGTTCTTTGGGGCCCTTGGCATCAGGACTGTGACTGGTCCTCTCTT
TGGTCTTTGAGGGAAATGGGGTATCAGTTTCCCCAGAAGGCGGAGTGGTCAGAGGCTGTG
CATAGGAGAGGCAATGGTGGGAATTCTGGAAGGGAAAGGAAAGGAGGAGAATCAGGGCTC
TGTCCCAGCCCAGCCACCCAGGTAGGAGGTGGAGAGACGCCTTTACCTATGGCTGAGTCC
CAGCCAGTGGATCTGCTGTCATATTGTCAGGCTGCTCCCCGAGCTCCAGGATGTGAAGGC
TCAGATGTTCCCTCCAAGCCCCACTCAGCAGGGAGGACAGGGCTGGTGGGTCTTCCAGGG
TCAAGTGGGGAAAGATGAGCGCCTCATTCTTGAGGGGGAAGCTGCACTTCTTCACCGCAG
GCCTGGTGGTGCCAGGGGTCACCACAAAAAGGCGGCAGAGCCATGGCCCACCCGCCACCT
GGCAGGCTGGTTGTCTGGTGAAGTTGTTCAGGGCTTGACACAGGAGCCAGTCCTCACTGC
CAGCCATGTCCACCACCTCCACTGGTGACCCCAGCCCGGGGAGGTGGAGGAGGTGCCGGG
GGGGCATGTAGGTGTGGGTGAAGAGGAGTGTGTAGCGGGTGGACACATGCGGGAGCACAG
GGGCATGAACCACCCGCTCCAGGTGCCCCAGGCCAGGCACGAGGCCGCCCTGGTGCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACGTATTTCAACATCACAGTGACTGGAAGGGGTAGGGCAGGAACAGACATTTGGCAT
TATTGATTATACCAGGTTCTTTGGGGCCCTTGGCATCAGGACTGTGACTGGTCCTCTCTT
TGGTCTTTGAGGGAAATGGGGTATCAGTTTCCCCAGAAGGCGGAGTGGTCAGAGGCTGTG
CATAGGAGAGGCAATGGTGGGAATTCTGGAAGGGAAAGGAAAGGAGGAGAATCAGGGCTC
TGTCCCAGCCCAGCCACCCAGGTAGGAGGTGGAGAGACGCCTTTACCTATGGCTGAGTCC
CAGCCAGTGGATCTGCTGTCATATTGTCAGGCTGCTCCCCGAGCTCCAGGATGTGAAGGC
TCAGATGTTCCCTCCAAGCCCCACTCAGCAGGGAGGACAGGGCTGGTGGGTCTTCCAGGG
TCAAGTGGGGAAAGATGAGCGCCTCATTCTTGAGGGGGAAGCTGCACTTCTTCACCGCAG
GCCTGGTGGTGCCAGGGGTCACCACAAAAAGGCGGCAGAGCCATGGCCCACCCGCCACCT
GGCAGGCTGGTTGTCTGGTGAAGTTGTTCAGGGCTTGACACAGGAGCCAGTCCTCACTGC
CAGCCATGTCCACCACCTCCACTGGTGACCCCAGCCCGGGGAGGTGGAGGAGGTGCCGGG
GGGGCATGTAGGTGTGGGTGAAGAGGAGTGTGTAGCGGGTGGACACATGCGGGAGCACAG
GGGCATGAACCACCCGCTCCAGGTGCCCCAGGCCAGGCACGAGGCCGCCCTGGTGCAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               599-778, + strand, RNAz p=0.99818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-778, + strand, RNAz p=0.99818

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               599-778, BP164051 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP164051.1|), blast E-value=0, identity=96.11% 
               

               
               604-778, CR747702 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGp998O1710632 ; 
(emb|CR747702.1|), blast E-value=4e-30, identity=84% 
               

               
               604-778, 102332 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW653577.1|), 
blast E-value=2e-32, identity=84.57% 
               

               
               665-778, LB0175.CR_H24 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820233.1|), 
blast E-value=4e-30, identity=90.35% 
               

               
               604-778, LB03022.CR_D18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931264.1|), 
blast E-value=7e-35, identity=85.14% 
               

               
               665-778, 000205BCXB002781HT BCXB Bos taurus cDNA, mRNA sequence 
(gb|DY094537.1|), blast E-value=4e-30, identity=90.35%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               599-778, BP164051 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP164051.1|), blast E-value=0, identity=96.11% 
               

               
               604-778, CR747702 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGp998O1710632 ; 
(emb|CR747702.1|), blast E-value=4e-30, identity=84% 
               

               
               604-778, 102332 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW653577.1|), 
blast E-value=2e-32, identity=84.57% 
               

               
               665-778, LB0175.CR_H24 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820233.1|), 
blast E-value=4e-30, identity=90.35% 
               

               
               604-778, LB03022.CR_D18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931264.1|), 
blast E-value=7e-35, identity=85.14% 
               

               
               665-778, 000205BCXB002781HT BCXB Bos taurus cDNA, mRNA sequence 
(gb|DY094537.1|), blast E-value=4e-30, identity=90.35%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-778, gnl|bosTau2|chr1 (42922837-42922062)
               

               
               1-778, gnl|Hg17|chr3 (198162033-198162790)
               

               
               1-778, gnl|Mm7|chr16 (31620550-31619854)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-778, gnl|bosTau2|chr1 (42922837-42922062)
               

               
               1-778, gnl|Hg17|chr3 (198162033-198162790)
               

               
               1-778, gnl|Mm7|chr16 (31620550-31619854)

	599-778, BP164051 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP164051.1\|), blast E-value=0, identity=96.11%
	604-778, CR747702 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGp998O1710632 ; (emb\|CR747702.1\|), blast E-value=4e-30, identity=84%
	604-778, 102332 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW653577.1\|), blast E-value=2e-32, identity=84.57%
	665-778, LB0175.CR_H24 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV820233.1\|), blast E-value=4e-30, identity=90.35%
	604-778, LB03022.CR_D18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV931264.1\|), blast E-value=7e-35, identity=85.14%
	665-778, 000205BCXB002781HT BCXB Bos taurus cDNA, mRNA sequence (gb\|DY094537.1\|), blast E-value=4e-30, identity=90.35%

	1-778, gnl\|bosTau2\|chr1 (42922837-42922062)
	1-778, gnl\|Hg17\|chr3 (198162033-198162790)
	1-778, gnl\|Mm7\|chr16 (31620550-31619854)