Non-Coding RNA Search

Thy1-THY010062G01

Sequence:


               
               AAATTCAGGCTCCCCAGAGGACAGTTGGGCATTCATCCAGAGGCTTGTGAGTAAACCTTT
TTTCTCTTTGTTGGATTGGAGATAACAATGGCCAGAACACCTCGGAAACTCTGTTTAAAT
TGCCAGACTTGAAGGGAGCCTTGTCTGGCTTTTGTGGGAAAGTTGACCCACCCTGAGCAG
GGGTCACCTCTGGCCTGAGGTAGAGATATTTTACCCAGAATCTGGCTGGTGGGGTTTGGT
AGCCCTGGGGCTCCTGAGCAGAGGCCAGGGTGAGGCTTGGGCCCAAGTCAGGAGAGAGGG
AAATGAGAGCTAGACGCGGGGAAGAGGATGCAGAAGAGGGGCCTCCATCGCCTCAGTGGC
TCGCTGTGGGTCAGGGCCACCTTGGTGAGGCCACGGGCTTCTGGGTCGTGTTCCATGACC
CTTTACTGACCCCCTCCCCAAACTAGCGTCAGCCACAAGCCCAATGTCCCAGCATTCTAG
CAGCAGAAAGATGTGGGTCGGCTTTTCCATTTGAGAGTGGCAGGGCCCTGGATCCTAGCA
CCTCTctctgtcactaaatcgctctgtgactcgggacaagtcacttcctccctctgagtc
tctgtttccccttttgtaaaatgagcggttggattaagtgatctttaagggcgtttccag
ctctATCATTGGACGGTTCTTGTGTTTCCTTATCCTCCAGCCTAATTTCTATTAGGTCCT
TGCCTGCTTCTGCTTCTGAATGAGGTGGCAGCATTTAGCTCCACCCCTTCGCTGCTTTGA
CTCCGGGAGCTGGGTGGGGAGAGGGTTGTAGAGAAAGCAAGCCTGTGCTTTTAGCGCAGC
AGGGTCTCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCAGGCTCCCCAGAGGACAGTTGGGCATTCATCCAGAGGCTTGTGAGTAAACCTTT
TTTCTCTTTGTTGGATTGGAGATAACAATGGCCAGAACACCTCGGAAACTCTGTTTAAAT
TGCCAGACTTGAAGGGAGCCTTGTCTGGCTTTTGTGGGAAAGTTGACCCACCCTGAGCAG
GGGTCACCTCTGGCCTGAGGTAGAGATATTTTACCCAGAATCTGGCTGGTGGGGTTTGGT
AGCCCTGGGGCTCCTGAGCAGAGGCCAGGGTGAGGCTTGGGCCCAAGTCAGGAGAGAGGG
AAATGAGAGCTAGACGCGGGGAAGAGGATGCAGAAGAGGGGCCTCCATCGCCTCAGTGGC
TCGCTGTGGGTCAGGGCCACCTTGGTGAGGCCACGGGCTTCTGGGTCGTGTTCCATGACC
CTTTACTGACCCCCTCCCCAAACTAGCGTCAGCCACAAGCCCAATGTCCCAGCATTCTAG
CAGCAGAAAGATGTGGGTCGGCTTTTCCATTTGAGAGTGGCAGGGCCCTGGATCCTAGCA
CCTCTctctgtcactaaatcgctctgtgactcgggacaagtcacttcctccctctgagtc
tctgtttccccttttgtaaaatgagcggttggattaagtgatctttaagggcgtttccag
ctctATCATTGGACGGTTCTTGTGTTTCCTTATCCTCCAGCCTAATTTCTATTAGGTCCT
TGCCTGCTTCTGCTTCTGAATGAGGTGGCAGCATTTAGCTCCACCCCTTCGCTGCTTTGA
CTCCGGGAGCTGGGTGGGGAGAGGGTTGTAGAGAAAGCAAGCCTGTGCTTTTAGCGCAGC
AGGGTCTCTGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               141-276, + strand, RNAz p=0.988825

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-276, + strand, RNAz p=0.988825

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-342, gnl|bosTau2|chrX (1365368-1365015)
               

               
               1-342, gnl|Hg17|chrX (118602043-118601688)
               

               
               1-342, gnl|Mm7|chrX (31743498-31743113)
               


               
               434-852, gnl|bosTau2|chrX (1364982-1364546)
               

               
               434-852, gnl|Hg17|chrX (118601594-118601148)
               

               
               434-852, gnl|Mm7|chrX (31743041-31742604)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-342, gnl|bosTau2|chrX (1365368-1365015)
               

               
               1-342, gnl|Hg17|chrX (118602043-118601688)
               

               
               1-342, gnl|Mm7|chrX (31743498-31743113)
               


               
               434-852, gnl|bosTau2|chrX (1364982-1364546)
               

               
               434-852, gnl|Hg17|chrX (118601594-118601148)
               

               
               434-852, gnl|Mm7|chrX (31743041-31742604)

	1-342, gnl\|bosTau2\|chrX (1365368-1365015)
	1-342, gnl\|Hg17\|chrX (118602043-118601688)
	1-342, gnl\|Mm7\|chrX (31743498-31743113)

	434-852, gnl\|bosTau2\|chrX (1364982-1364546)
	434-852, gnl\|Hg17\|chrX (118601594-118601148)
	434-852, gnl\|Mm7\|chrX (31743041-31742604)