Non-Coding RNA Search

Thy1-THY010063D04

Sequence:


               
               CTGTACCTGCATTGGAGCTGGGCGAGGCAGAATAAGTTGCACCATTGCAAGTAAGAATGT
CATTCTGTCACATGCTGCTAAATTATCATAATATGAATTTCCTCATCACCATCACTGTCA
CTTTCTGTTATCCATGACTGGATAATCCTCATTTGGGGATTTACCCTAGGTGACCAGGCA
CCCTTAGGTGGTCACCCAGCCGGTTCTTGTGCTTCTGGAAGATGGCTCTGAGTGCAGGTG
GAGTCAGTGTTTAGTCTGTGTGGATTTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTACACAGTGGAACCACGTGGATCTCTTGGATTCTATTCCAGTACAACATGCTTAGA
GGAATTGCCCATTTTATGTTATCTGGGCATCTTCAGGCCGGGCTGTTTACGTGGTGATCT
GCAGGCATTAGGAAGATGGTCACTAAGGACATGAGCCACTCTGTGGGCTGCTCTTCTTGA
TCGCAACACAGAGACCTCTTGGATCTCACGGAAACAGTCTGATTTCTTTCTGACCAGTAT
TTTATACCCAGGAAGCAGGTCTTTCTATTCCCAGGCATAATATGGAATGATTAGCCCAAA
AGTGTTTCCAAGGGACTTTGGGATCTGGATTCACTCTCAGCAATTCTAGTTTAGCTATGG
CAGTCTTTCCAGTATGACTCATTGGGTTACCAACAGATTCTATTAACATAGCATTTAGTT
TTTTCAATCCATTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTACCTGCATTGGAGCTGGGCGAGGCAGAATAAGTTGCACCATTGCAAGTAAGAATGT
CATTCTGTCACATGCTGCTAAATTATCATAATATGAATTTCCTCATCACCATCACTGTCA
CTTTCTGTTATCCATGACTGGATAATCCTCATTTGGGGATTTACCCTAGGTGACCAGGCA
CCCTTAGGTGGTCACCCAGCCGGTTCTTGTGCTTCTGGAAGATGGCTCTGAGTGCAGGTG
GAGTCAGTGTTTAGTCTGTGTGGATTTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTACACAGTGGAACCACGTGGATCTCTTGGATTCTATTCCAGTACAACATGCTTAGA
GGAATTGCCCATTTTATGTTATCTGGGCATCTTCAGGCCGGGCTGTTTACGTGGTGATCT
GCAGGCATTAGGAAGATGGTCACTAAGGACATGAGCCACTCTGTGGGCTGCTCTTCTTGA
TCGCAACACAGAGACCTCTTGGATCTCACGGAAACAGTCTGATTTCTTTCTGACCAGTAT
TTTATACCCAGGAAGCAGGTCTTTCTATTCCCAGGCATAATATGGAATGATTAGCCCAAA
AGTGTTTCCAAGGGACTTTGGGATCTGGATTCACTCTCAGCAATTCTAGTTTAGCTATGG
CAGTCTTTCCAGTATGACTCATTGGGTTACCAACAGATTCTATTAACATAGCATTTAGTT
TTTTCAATCCATTATTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               239-423, - strand, RNAz p=0.859052
               

               
               462-620, - strand, RNAz p=0.928641

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-423, - strand, RNAz p=0.859052
               

               
               462-620, - strand, RNAz p=0.928641

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr2 (47423678-47424402)
               

               
               1-732, gnl|Hg17|chr2 (216123602-216122873)
               

               
               1-732, gnl|Mm7|chr1 (71892452-71891817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr2 (47423678-47424402)
               

               
               1-732, gnl|Hg17|chr2 (216123602-216122873)
               

               
               1-732, gnl|Mm7|chr1 (71892452-71891817)

	239-423, - strand, RNAz p=0.859052
	462-620, - strand, RNAz p=0.928641

	1-732, gnl\|bosTau2\|chr2 (47423678-47424402)
	1-732, gnl\|Hg17\|chr2 (216123602-216122873)
	1-732, gnl\|Mm7\|chr1 (71892452-71891817)