Non-Coding RNA Search

Thy1-THY010065B02

Sequence:


               
               TTTGATTGACTTTCAAGTAAAAGAATTGTGCCACTTTGTTGTACCTGAATGGAAGAAAAC
CAGGAGCCCCAGGAGCAGTCTATGGGGGCTCCTCAATGATCTATTGAGGCTTTTCTTCCA
GGTACACTGAGATCCCAAGATAGCTGCATGAAGGGACTGTAGGCATAAGGCCATCAGATA
CACCAGTGTGCACATGTATGTGCCTACACATGTATACCTGCTCTCACTGCCTTGTCTCTG
GGAGCCATGGACCAAGTCGGCCAAGCTCTAGACCAAGGCCACTGTGAATGATGGCTCAGG
CTACACGCTGAACAGTTCAGGGCATCACCACAGACTACAATGTGAATGTCTCTCTTACTC
CTGCCCCCTAGAAGTTATAAACTATCCTTGGAGAAAGCTACACATTGTTTTGAAAACCGG
CAGGAACCCACTCCTGCCGGGTGAAAGTTCAACAGGATTCGATTCTCTTCTCGCTCTGCA
GCCGGGTCTCAGGCTCTGCTCTCAGCACAGGCACACACTGCGTGCACACTGTACTTTATG
CATTTCCCCTTTCCTTTAATCCAGGCTTGTTCGTAAGGTCTCCGCTTCCACATCTCTGAA
CCACAGGTGGAAGGGGAAACGCCCCAGCAAATTGGGGGTGGGGAGTTAGTTCGTGGGGGT
TGATTTCCCAACTCTGGGCTCCTCTAGCCTTCTGGAACCACCTAATGCCAATCTTGGCAG
TCTTTTTTCTCCAGTGCTGTCTTCTTGAAACCCAATCCCATGCAATAAAGCACGTTTATT
CATGCAACACAGCTCAGTCGATGCTTACAGTTCCAACAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGATTGACTTTCAAGTAAAAGAATTGTGCCACTTTGTTGTACCTGAATGGAAGAAAAC
CAGGAGCCCCAGGAGCAGTCTATGGGGGCTCCTCAATGATCTATTGAGGCTTTTCTTCCA
GGTACACTGAGATCCCAAGATAGCTGCATGAAGGGACTGTAGGCATAAGGCCATCAGATA
CACCAGTGTGCACATGTATGTGCCTACACATGTATACCTGCTCTCACTGCCTTGTCTCTG
GGAGCCATGGACCAAGTCGGCCAAGCTCTAGACCAAGGCCACTGTGAATGATGGCTCAGG
CTACACGCTGAACAGTTCAGGGCATCACCACAGACTACAATGTGAATGTCTCTCTTACTC
CTGCCCCCTAGAAGTTATAAACTATCCTTGGAGAAAGCTACACATTGTTTTGAAAACCGG
CAGGAACCCACTCCTGCCGGGTGAAAGTTCAACAGGATTCGATTCTCTTCTCGCTCTGCA
GCCGGGTCTCAGGCTCTGCTCTCAGCACAGGCACACACTGCGTGCACACTGTACTTTATG
CATTTCCCCTTTCCTTTAATCCAGGCTTGTTCGTAAGGTCTCCGCTTCCACATCTCTGAA
CCACAGGTGGAAGGGGAAACGCCCCAGCAAATTGGGGGTGGGGAGTTAGTTCGTGGGGGT
TGATTTCCCAACTCTGGGCTCCTCTAGCCTTCTGGAACCACCTAATGCCAATCTTGGCAG
TCTTTTTTCTCCAGTGCTGTCTTCTTGAAACCCAATCCCATGCAATAAAGCACGTTTATT
CATGCAACACAGCTCAGTCGATGCTTACAGTTCCAACAAC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               114-233, - strand, RNAz p=0.725154
               

               
               161-271, - strand, RNAz p=0.718819
               

               
               603-719, - strand, RNAz p=0.595536
               

               
               675-789, - strand, RNAz p=0.720627

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-233, - strand, RNAz p=0.725154
               

               
               161-271, - strand, RNAz p=0.718819
               

               
               603-719, - strand, RNAz p=0.595536
               

               
               675-789, - strand, RNAz p=0.720627

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-816, gnl|bosTau2|chr29 (3043337-3042525)
               

               
               1-816, gnl|canFam2|chr21 (14471897-14470148)
               

               
               1-816, gnl|dasNov1|scaffold_36177 (6711-4956)
               

               
               1-816, gnl|echTel1|scaffold_321743 (61703-63343)
               

               
               1-816, gnl|hg17|chr11 (87895147-87896996)
               

               
               1-816, gnl|Hg17|chr11 (87896239-87897420)
               

               
               1-816, gnl|loxAfr1|scaffold_9726 (30942-29150)
               

               
               1-816, gnl|mm7|chr7 (84056433-84054757)
               

               
               1-816, gnl|Mm7|chr7 (84055419-84054656)
               

               
               1-816, gnl|oryCun1|scaffold_183711 (13476-11711)
               

               
               1-816, gnl|panTro1|chr9 (89729684-89731535)
               

               
               1-816, gnl|rheMac2|chr14 (86710235-86712092)
               

               
               1-816, gnl|rn3|chr1 (144542490-144540781)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr29 (3043337-3042525)
               

               
               1-816, gnl|canFam2|chr21 (14471897-14470148)
               

               
               1-816, gnl|dasNov1|scaffold_36177 (6711-4956)
               

               
               1-816, gnl|echTel1|scaffold_321743 (61703-63343)
               

               
               1-816, gnl|hg17|chr11 (87895147-87896996)
               

               
               1-816, gnl|Hg17|chr11 (87896239-87897420)
               

               
               1-816, gnl|loxAfr1|scaffold_9726 (30942-29150)
               

               
               1-816, gnl|mm7|chr7 (84056433-84054757)
               

               
               1-816, gnl|Mm7|chr7 (84055419-84054656)
               

               
               1-816, gnl|oryCun1|scaffold_183711 (13476-11711)
               

               
               1-816, gnl|panTro1|chr9 (89729684-89731535)
               

               
               1-816, gnl|rheMac2|chr14 (86710235-86712092)
               

               
               1-816, gnl|rn3|chr1 (144542490-144540781)

	114-233, - strand, RNAz p=0.725154
	161-271, - strand, RNAz p=0.718819
	603-719, - strand, RNAz p=0.595536
	675-789, - strand, RNAz p=0.720627

	1-816, gnl\|bosTau2\|chr29 (3043337-3042525)
	1-816, gnl\|canFam2\|chr21 (14471897-14470148)
	1-816, gnl\|dasNov1\|scaffold_36177 (6711-4956)
	1-816, gnl\|echTel1\|scaffold_321743 (61703-63343)
	1-816, gnl\|hg17\|chr11 (87895147-87896996)
	1-816, gnl\|Hg17\|chr11 (87896239-87897420)
	1-816, gnl\|loxAfr1\|scaffold_9726 (30942-29150)
	1-816, gnl\|mm7\|chr7 (84056433-84054757)
	1-816, gnl\|Mm7\|chr7 (84055419-84054656)
	1-816, gnl\|oryCun1\|scaffold_183711 (13476-11711)
	1-816, gnl\|panTro1\|chr9 (89729684-89731535)
	1-816, gnl\|rheMac2\|chr14 (86710235-86712092)
	1-816, gnl\|rn3\|chr1 (144542490-144540781)