Non-Coding RNA Search

Thy1-THY010067H10

Sequence:


               
               CTTGTgttgccatgagctgtggtgtacgtcgcagacatggctcggatccttcattggtat
ggctgtggtgtaggccggtggcttcagctctgattggatccctggcttgggaacctctat
atgccatgggtgtggccctaaaaagCAAAAAAAAAGCATATCACACAAACAAAGAACAGT
AACAGCAACAAAGCACGGGATTGCTGGTCCCAGCGAGAGCTGGGTAGAACCCATCCTGCT
GGCTCCCCCAGCTTGCCCAGCCCACCCTACCTGGCTGAGAATCCCATACATGTTCAAGTC
ACCCAGGAACCTCCCGCTGGGTGTTCTTGTTTTGTCAGCCTGCTTCTCTGCAGCACAGGG
TTTTTCATCTTTAAACCACAGATCCCGTCTTCCCAAGCGTGTTGACATGGCGGTAGGTTT
TGAACAACCCAGTCGGCTTTTCTGACTCAGGCGGGGCTCACCTGCCCATACGGGTGCACA
CACCTGCTCATAAAGGCCGAATGTACTTTATAAGCTCTTGCGTGGAGACTGGGGTAACGG
GCGTGGCCAGCTGAATGGCCTGCTGGGTGGACACCTCAATGGAAGAAACAGGCAAGCATC
TCCCCTTCCCCTGCCCCAGGCACACCTGCACAGAGGTCGGCCAGCTGCTGAGAGCCAGCG
AGGTATTATTTACATTACTAATAACATTAATGACAATATAAATGACAAAGCAAGTGTAAT
TGCATATCAGGAAATCCTGAAATTAAAGGTCTGTAATTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTgttgccatgagctgtggtgtacgtcgcagacatggctcggatccttcattggtat
ggctgtggtgtaggccggtggcttcagctctgattggatccctggcttgggaacctctat
atgccatgggtgtggccctaaaaagCAAAAAAAAAGCATATCACACAAACAAAGAACAGT
AACAGCAACAAAGCACGGGATTGCTGGTCCCAGCGAGAGCTGGGTAGAACCCATCCTGCT
GGCTCCCCCAGCTTGCCCAGCCCACCCTACCTGGCTGAGAATCCCATACATGTTCAAGTC
ACCCAGGAACCTCCCGCTGGGTGTTCTTGTTTTGTCAGCCTGCTTCTCTGCAGCACAGGG
TTTTTCATCTTTAAACCACAGATCCCGTCTTCCCAAGCGTGTTGACATGGCGGTAGGTTT
TGAACAACCCAGTCGGCTTTTCTGACTCAGGCGGGGCTCACCTGCCCATACGGGTGCACA
CACCTGCTCATAAAGGCCGAATGTACTTTATAAGCTCTTGCGTGGAGACTGGGGTAACGG
GCGTGGCCAGCTGAATGGCCTGCTGGGTGGACACCTCAATGGAAGAAACAGGCAAGCATC
TCCCCTTCCCCTGCCCCAGGCACACCTGCACAGAGGTCGGCCAGCTGCTGAGAGCCAGCG
AGGTATTATTTACATTACTAATAACATTAATGACAATATAAATGACAAAGCAAGTGTAAT
TGCATATCAGGAAATCCTGAAATTAAAGGTCTGTAATTCAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               232-332, - strand, RNAz p=0.894954
               

               
               373-569, - strand, RNAz p=0.996453
               

               
               646-761, - strand, RNAz p=0.914031

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-332, - strand, RNAz p=0.894954
               

               
               373-569, - strand, RNAz p=0.996453
               

               
               646-761, - strand, RNAz p=0.914031

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               154-761, gnl|bosTau2|chr15 (26287927-26288549)
               

               
               154-761, gnl|Hg17|chr11 (12123545-12124111)
               

               
               154-761, gnl|Mm7|chr7 (108171535-108172053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-761, gnl|bosTau2|chr15 (26287927-26288549)
               

               
               154-761, gnl|Hg17|chr11 (12123545-12124111)
               

               
               154-761, gnl|Mm7|chr7 (108171535-108172053)

	232-332, - strand, RNAz p=0.894954
	373-569, - strand, RNAz p=0.996453
	646-761, - strand, RNAz p=0.914031

	154-761, gnl\|bosTau2\|chr15 (26287927-26288549)
	154-761, gnl\|Hg17\|chr11 (12123545-12124111)
	154-761, gnl\|Mm7\|chr7 (108171535-108172053)