Non-Coding RNA Search

Thy1-THY010070D07

Sequence:


               
               TTGTTTATCCTCACTTCTTTTTCCAGCTCTGGGTGGGAACAGGGAGCTCCCCCACCCTTG
TTGTCCCTGGATCTGTGATTGGCTGTGCTCTCTGTGCATATCCACTTCCCAGTTTTCCAC
ACTTTTGTCTCGCTCACTCTTGCCCTCTCAGCACAGAGGGTAGTGGCTCTCTTCTGGTCA
GTAAAGGAAAAGGAAGGGAATGTAACAGGTATTGAGGCCCTGTTACATGTGGGCACTTTA
TATTTATTGGATGTTTTGGTGGCCATTTGGCAGCCTCTACTTCCAGGCTGTGTAACTTTG
GACAGATTTCTCAACTGTGCTAAGTTTTATTTTTCTTGTCCATTTAAGTGGGAATAATAA
AATCTACTTCCTTGGGGAATTGTGTGCCTATGTAGTGCTTGGCAGAGCTAGTGCCCAGTG
GGTACTGGAAGTGTGTCAACTCTTACTTGTCTCATGTCATCTTTACTGCTGTCCTCTGAA
GTAGTGGCATTGCCCCCATGTTACAGGTGGGGAACTGGAAGCTCAGAGCAGTCCCAAAGT
GGCAGAGCTGGGTCAGAAGCCAAGAGTTACAGTCTTTGTGTCATTGAGTAAATGACTTAC
TCTCTCGGGGCCTCAATTGCTTCATGGGTAAAATGGGGATAATCCTGCCCTGCTGTGTGT
GTATGTGGACCAGTCAGATGGGAAAAGGGATGTGAAAGTGCTAAGTAAGCAGCAATTACC
AGTCACATAATTGCTGCCATTAACTGGACACCCAGCAGGCTGGGTCCTTAGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTATCCTCACTTCTTTTTCCAGCTCTGGGTGGGAACAGGGAGCTCCCCCACCCTTG
TTGTCCCTGGATCTGTGATTGGCTGTGCTCTCTGTGCATATCCACTTCCCAGTTTTCCAC
ACTTTTGTCTCGCTCACTCTTGCCCTCTCAGCACAGAGGGTAGTGGCTCTCTTCTGGTCA
GTAAAGGAAAAGGAAGGGAATGTAACAGGTATTGAGGCCCTGTTACATGTGGGCACTTTA
TATTTATTGGATGTTTTGGTGGCCATTTGGCAGCCTCTACTTCCAGGCTGTGTAACTTTG
GACAGATTTCTCAACTGTGCTAAGTTTTATTTTTCTTGTCCATTTAAGTGGGAATAATAA
AATCTACTTCCTTGGGGAATTGTGTGCCTATGTAGTGCTTGGCAGAGCTAGTGCCCAGTG
GGTACTGGAAGTGTGTCAACTCTTACTTGTCTCATGTCATCTTTACTGCTGTCCTCTGAA
GTAGTGGCATTGCCCCCATGTTACAGGTGGGGAACTGGAAGCTCAGAGCAGTCCCAAAGT
GGCAGAGCTGGGTCAGAAGCCAAGAGTTACAGTCTTTGTGTCATTGAGTAAATGACTTAC
TCTCTCGGGGCCTCAATTGCTTCATGGGTAAAATGGGGATAATCCTGCCCTGCTGTGTGT
GTATGTGGACCAGTCAGATGGGAAAAGGGATGTGAAAGTGCTAAGTAAGCAGCAATTACC
AGTCACATAATTGCTGCCATTAACTGGACACCCAGCAGGCTGGGTCCTTAGATAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               244-359, - strand, RNAz p=0.59054

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-359, - strand, RNAz p=0.59054

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-775, gnl|bosTau2|chr17 (42521791-42521047)
               

               
               1-775, gnl|canFam2|chr26 (26493357-26494192)
               

               
               1-775, gnl|dasNov1|scaffold_53262 (4050-3142)
               

               
               1-775, gnl|echTel1|scaffold_319265 (1044-2175)
               

               
               1-775, gnl|hg17|chr22 (29030745-29031608)
               

               
               1-775, gnl|Hg17|chr22 (29031636-29030799)
               

               
               1-775, gnl|mm7|chr11 (4151394-4150615)
               

               
               1-775, gnl|Mm7|chr11 (4150580-4151351)
               

               
               1-775, gnl|oryCun1|scaffold_205853 (37426-38210)
               

               
               1-775, gnl|panTro1|chr23 (29125612-29126477)
               

               
               1-775, gnl|rheMac2|chr10 (74162625-74163486)
               

               
               1-775, gnl|rn3|chr14 (84841709-84840957)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-775, gnl|bosTau2|chr17 (42521791-42521047)
               

               
               1-775, gnl|canFam2|chr26 (26493357-26494192)
               

               
               1-775, gnl|dasNov1|scaffold_53262 (4050-3142)
               

               
               1-775, gnl|echTel1|scaffold_319265 (1044-2175)
               

               
               1-775, gnl|hg17|chr22 (29030745-29031608)
               

               
               1-775, gnl|Hg17|chr22 (29031636-29030799)
               

               
               1-775, gnl|mm7|chr11 (4151394-4150615)
               

               
               1-775, gnl|Mm7|chr11 (4150580-4151351)
               

               
               1-775, gnl|oryCun1|scaffold_205853 (37426-38210)
               

               
               1-775, gnl|panTro1|chr23 (29125612-29126477)
               

               
               1-775, gnl|rheMac2|chr10 (74162625-74163486)
               

               
               1-775, gnl|rn3|chr14 (84841709-84840957)

	1-775, gnl\|bosTau2\|chr17 (42521791-42521047)
	1-775, gnl\|canFam2\|chr26 (26493357-26494192)
	1-775, gnl\|dasNov1\|scaffold_53262 (4050-3142)
	1-775, gnl\|echTel1\|scaffold_319265 (1044-2175)
	1-775, gnl\|hg17\|chr22 (29030745-29031608)
	1-775, gnl\|Hg17\|chr22 (29031636-29030799)
	1-775, gnl\|mm7\|chr11 (4151394-4150615)
	1-775, gnl\|Mm7\|chr11 (4150580-4151351)
	1-775, gnl\|oryCun1\|scaffold_205853 (37426-38210)
	1-775, gnl\|panTro1\|chr23 (29125612-29126477)
	1-775, gnl\|rheMac2\|chr10 (74162625-74163486)
	1-775, gnl\|rn3\|chr14 (84841709-84840957)