Non-Coding RNA Search

Thy1-THY010070H04

Sequence:


               
               ATTTTTGTAGGCTTTGGATAGTTGTGAATGCCAGAATTCTGAACTTTGAATAAGTAAGGT
GTTGAGCTAATAAAAATGATAATTTTTGTTTGTATAGTGCTTTTTTATATGATTCTGGAG
TGATTTCCTTTGCATCTTTCTATGGGATTCACCCATAGATGTTAATCACCCAACAGAGGA
AGGAACTCAGGTGTGGAAAGTCTTGGTAACCTGTCTCTAGTGCCAGGAAGTGGCAGCTCT
TCTGACTCCCCACCTTTTGTCTTTTCAGATTTGTTTCTTTAGGATCAATGTATGTGGATT
TTAGAATGAGCCCAGGGTATAGCAGTCATGTATAACTTGAGACTCTTTTTGGTTGCAAGT
ATTTGAAAGTGCTCTAACTGGTCTAAGCCAAAGGGAAATATCCTGGTTCACATTAGTGAA
AAGTCATAGAGTAGAAACTGCTTCAGGAATGGCTTGATCCAGCAGTTCCAATGACCTACT
CGGAATCCAGTTTCTGTCTTTGCTTCATTTCACAGCCAGACTCTCCCCTCATGGGTGTTG
TTGAGTCCAGGTTCTCATCCTCACAACTTTAAGTCTAATAGAACAAGACTGTCTTCCTCG
TAGCTTCTCCATGAGCTCCAGGATTCATTCTGATTGCATCAGTCAGGGCCACTGCCCATC
CCAGGTCTAAAAGCAAACCAGGATGGAATTATGCTGATTGGCTGGCCCTGGGTGGTGACT
TGCCTGAACCATTCACCGTGACTGGAGAGACTCAGAGCGCTACTTGGCCAGCTCTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTGTAGGCTTTGGATAGTTGTGAATGCCAGAATTCTGAACTTTGAATAAGTAAGGT
GTTGAGCTAATAAAAATGATAATTTTTGTTTGTATAGTGCTTTTTTATATGATTCTGGAG
TGATTTCCTTTGCATCTTTCTATGGGATTCACCCATAGATGTTAATCACCCAACAGAGGA
AGGAACTCAGGTGTGGAAAGTCTTGGTAACCTGTCTCTAGTGCCAGGAAGTGGCAGCTCT
TCTGACTCCCCACCTTTTGTCTTTTCAGATTTGTTTCTTTAGGATCAATGTATGTGGATT
TTAGAATGAGCCCAGGGTATAGCAGTCATGTATAACTTGAGACTCTTTTTGGTTGCAAGT
ATTTGAAAGTGCTCTAACTGGTCTAAGCCAAAGGGAAATATCCTGGTTCACATTAGTGAA
AAGTCATAGAGTAGAAACTGCTTCAGGAATGGCTTGATCCAGCAGTTCCAATGACCTACT
CGGAATCCAGTTTCTGTCTTTGCTTCATTTCACAGCCAGACTCTCCCCTCATGGGTGTTG
TTGAGTCCAGGTTCTCATCCTCACAACTTTAAGTCTAATAGAACAAGACTGTCTTCCTCG
TAGCTTCTCCATGAGCTCCAGGATTCATTCTGATTGCATCAGTCAGGGCCACTGCCCATC
CCAGGTCTAAAAGCAAACCAGGATGGAATTATGCTGATTGGCTGGCCCTGGGTGGTGACT
TGCCTGAACCATTCACCGTGACTGGAGAGACTCAGAGCGCTACTTGGCCAGCTCTGGTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               94-192, - strand, RNAz p=0.980665
               

               
               627-739, - strand, RNAz p=0.802404

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-192, - strand, RNAz p=0.980665
               

               
               627-739, - strand, RNAz p=0.802404

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               2-458, gnl|bosTau2|chr24 (23511575-23512044)
               

               
               2-458, gnl|Hg17|chr18 (19232318-19231504)
               


               
               493-779, gnl|bosTau2|chr24 (23512482-23512775)
               

               
               493-779, gnl|Hg17|chr18 (19231449-19231147)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-458, gnl|bosTau2|chr24 (23511575-23512044)
               

               
               2-458, gnl|Hg17|chr18 (19232318-19231504)
               


               
               493-779, gnl|bosTau2|chr24 (23512482-23512775)
               

               
               493-779, gnl|Hg17|chr18 (19231449-19231147)

	94-192, - strand, RNAz p=0.980665
	627-739, - strand, RNAz p=0.802404

	2-458, gnl\|bosTau2\|chr24 (23511575-23512044)
	2-458, gnl\|Hg17\|chr18 (19232318-19231504)

	493-779, gnl\|bosTau2\|chr24 (23512482-23512775)
	493-779, gnl\|Hg17\|chr18 (19231449-19231147)