Non-Coding RNA Search

Thy1-THY010091A02

Sequence:


               
               TTACAGCCTAGAAAGCCCATAGCCCCAAAGGAAAGCTTGCTCAGTACAAGCAGAGGTGTT
TCTTGGAGCATGTGTAAGTCTGTACGGATGTGCAAACAGGAATTGATCTGACAACGTGAA
GACATGGCAGCCTCCTCTAATTAAAGCCTCTTGATGACATTAAAGTGTGTTGCTTAATTA
CGGTGAATCATACATTAACAGATCATGTCTCTGAAGAGGCATTGTCAGTATGCCGCGTGA
TGGAACAAAACTTGACCTTGTATTCTCGGGGCTTCTGCAAGGTGATGGCTCTTGCTGCCC
GGGGGGCGATGTGGGCCCCACTTGGCGTTACTTTGAAGTAACTCAGATCTTAGCGAGTGG
GTCCTGATCATTCGGTTTATATGAAAACGGTTTCTTGATGGCTACATACTTGACATGTAA
GGACGGTTTTATATACATTCAAGGGAACAGAGTTTTCATTCCCTGTGTATTTTCACAGCC
ACTAGTTTTCAGACCCCCTTTTATATTTTCTGGACTTGGCTTGACTTACCTTCCACAGCA
AGGTAAGTCATTCGGCCAAGTCCTTGTTTCTTTCATTTTTCACGTTCATTCGGCCAAGTC
CTTGTTTCTTTCTCCTTGAGGCAGCATTTGGAGCCTGTTGATTCCCAGATGGATCAAGCA
GGTAATGGCTATTTTTACCGGTGGAGCATCTGGTGGACATTAGATATGTTCTGTATGTTT
CTCTCCTAGATTCTTAATACTAAAATACTCGGGGTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAGCCTAGAAAGCCCATAGCCCCAAAGGAAAGCTTGCTCAGTACAAGCAGAGGTGTT
TCTTGGAGCATGTGTAAGTCTGTACGGATGTGCAAACAGGAATTGATCTGACAACGTGAA
GACATGGCAGCCTCCTCTAATTAAAGCCTCTTGATGACATTAAAGTGTGTTGCTTAATTA
CGGTGAATCATACATTAACAGATCATGTCTCTGAAGAGGCATTGTCAGTATGCCGCGTGA
TGGAACAAAACTTGACCTTGTATTCTCGGGGCTTCTGCAAGGTGATGGCTCTTGCTGCCC
GGGGGGCGATGTGGGCCCCACTTGGCGTTACTTTGAAGTAACTCAGATCTTAGCGAGTGG
GTCCTGATCATTCGGTTTATATGAAAACGGTTTCTTGATGGCTACATACTTGACATGTAA
GGACGGTTTTATATACATTCAAGGGAACAGAGTTTTCATTCCCTGTGTATTTTCACAGCC
ACTAGTTTTCAGACCCCCTTTTATATTTTCTGGACTTGGCTTGACTTACCTTCCACAGCA
AGGTAAGTCATTCGGCCAAGTCCTTGTTTCTTTCATTTTTCACGTTCATTCGGCCAAGTC
CTTGTTTCTTTCTCCTTGAGGCAGCATTTGGAGCCTGTTGATTCCCAGATGGATCAAGCA
GGTAATGGCTATTTTTACCGGTGGAGCATCTGGTGGACATTAGATATGTTCTGTATGTTT
CTCTCCTAGATTCTTAATACTAAAATACTCGGGGTGGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               115-353, - strand, RNAz p=0.994834

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-353, - strand, RNAz p=0.994834

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               138-263, - strand, RNAmicro p=0.999844

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               138-263, - strand, RNAmicro p=0.999844

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               47-573, gnl|bosTau2|chr23 (36918030-36917498)
               

               
               47-573, gnl|Hg17|chr6 (15442264-15442796)
               


               
               576-759, gnl|bosTau2|chr23 (36917533-36917343)
               

               
               576-759, gnl|Hg17|chr6 (15442761-15442932)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-573, gnl|bosTau2|chr23 (36918030-36917498)
               

               
               47-573, gnl|Hg17|chr6 (15442264-15442796)
               


               
               576-759, gnl|bosTau2|chr23 (36917533-36917343)
               

               
               576-759, gnl|Hg17|chr6 (15442761-15442932)

	47-573, gnl\|bosTau2\|chr23 (36918030-36917498)
	47-573, gnl\|Hg17\|chr6 (15442264-15442796)

	576-759, gnl\|bosTau2\|chr23 (36917533-36917343)
	576-759, gnl\|Hg17\|chr6 (15442761-15442932)