Non-Coding RNA Search

Thy1-THY010092A08

Sequence:


               
               TACTGGCACCCTTAATGGGCATAATTATGAGGTGAAAAAGAACCTTTCTAAATAAGAAGT
GTAGTCTGTGGGATTGCAAAGAGGTAGAAGTGGATGTGATAACTTTATAAGTCATTGAGG
ATACTTTAGCCATGGTGGACACCTTGGTTGGAAGAGGAGACTATGGTGGTGGAGGCTGTG
GCAGCAGAGGTAGTTAAGGAGGTGATGGTGGTAGAAATAATGGATTTGGAGGTTACAGTG
GCAACCATCATGATGGCCCTAATTATAGTACTACAGGAGGCTATGGTGGTGGGGGGCCAG
GATATGGAAACCAAGGTGGTAGAAATGCTGGTGGTGGCAGAGGATATGGTGGTTACGAAG
AAGGCGGATGTTTCAGCACTGGTAACTGTGGTGGTGCAGGAAACtaaagattttggaaat
tatagtggacaacagcaatcaaattatgggcccatgaagggggccagttttggtggaaga
acctagggctgcccatgtggtgattatggatctgatgatgtaagtgagagatatgtgagc
agaaaggttctaaaaactcggcagtaaagggctacagttcttagtgggagagacagtgag
gaattgtcagaaaagctacaggttactttgaggcagtcatcataaaggcattagaggacc
tataaaaatctgctacagaaagaaccatgatgcatagtcagaaaagttactgcagcttaa
acaggaaacccttctagtttaagattgccatagccacggtttgcaaaaaggtaattaact
gattaatgcaatgtagtgccaattagatgtacattcctaaggTCTTTTATCTCTTTTAGC
TTTGTCTTTTTCTTTTCATTACACTCGGCACACTGTACTATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGGCACCCTTAATGGGCATAATTATGAGGTGAAAAAGAACCTTTCTAAATAAGAAGT
GTAGTCTGTGGGATTGCAAAGAGGTAGAAGTGGATGTGATAACTTTATAAGTCATTGAGG
ATACTTTAGCCATGGTGGACACCTTGGTTGGAAGAGGAGACTATGGTGGTGGAGGCTGTG
GCAGCAGAGGTAGTTAAGGAGGTGATGGTGGTAGAAATAATGGATTTGGAGGTTACAGTG
GCAACCATCATGATGGCCCTAATTATAGTACTACAGGAGGCTATGGTGGTGGGGGGCCAG
GATATGGAAACCAAGGTGGTAGAAATGCTGGTGGTGGCAGAGGATATGGTGGTTACGAAG
AAGGCGGATGTTTCAGCACTGGTAACTGTGGTGGTGCAGGAAACtaaagattttggaaat
tatagtggacaacagcaatcaaattatgggcccatgaagggggccagttttggtggaaga
acctagggctgcccatgtggtgattatggatctgatgatgtaagtgagagatatgtgagc
agaaaggttctaaaaactcggcagtaaagggctacagttcttagtgggagagacagtgag
gaattgtcagaaaagctacaggttactttgaggcagtcatcataaaggcattagaggacc
tataaaaatctgctacagaaagaaccatgatgcatagtcagaaaagttactgcagcttaa
acaggaaacccttctagtttaagattgccatagccacggtttgcaaaaaggtaattaact
gattaatgcaatgtagtgccaattagatgtacattcctaaggTCTTTTATCTCTTTTAGC
TTTGTCTTTTTCTTTTCATTACACTCGGCACACTGTACTATAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               604-723, - strand, RNAz p=0.977313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-723, - strand, RNAz p=0.977313

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               604-723, BP160138 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP160138.1|), blast E-value=0, identity=100% 
               

               
               604-723, BP467394 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP467394.1|), blast E-value=2e-31, identity=90% 
               

               
               604-723, BP480115 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP480115.1|), blast E-value=2e-31, identity=90% 
               

               
               604-723, UI-R-DZ0-crm-p-02-0-UI.s1 NCI_CGAP_DZ0 Rattus norvegicus cDNA clone 
(gb|CB325145.1|), blast E-value=4e-32, identity=90% 
               

               
               604-723, AGENCOURT_66815486 NIH_MGC_365 Rattus norvegicus cDNA clone 
(gb|DY314885.1|), blast E-value=2e-31, identity=90% 
               

               
               604-723, AGENCOURT_66889057 NIH_MGC_365 Rattus norvegicus cDNA clone 
(gb|DY315637.1|), blast E-value=2e-31, identity=90%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               604-723, BP160138 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP160138.1|), blast E-value=0, identity=100% 
               

               
               604-723, BP467394 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP467394.1|), blast E-value=2e-31, identity=90% 
               

               
               604-723, BP480115 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP480115.1|), blast E-value=2e-31, identity=90% 
               

               
               604-723, UI-R-DZ0-crm-p-02-0-UI.s1 NCI_CGAP_DZ0 Rattus norvegicus cDNA clone 
(gb|CB325145.1|), blast E-value=4e-32, identity=90% 
               

               
               604-723, AGENCOURT_66815486 NIH_MGC_365 Rattus norvegicus cDNA clone 
(gb|DY314885.1|), blast E-value=2e-31, identity=90% 
               

               
               604-723, AGENCOURT_66889057 NIH_MGC_365 Rattus norvegicus cDNA clone 
(gb|DY315637.1|), blast E-value=2e-31, identity=90%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-805, gnl|bosTau2|chr23 (18991881-18992654)
               

               
               35-805, gnl|Hg17|chr13 (65260610-65259815)
               

               
               35-805, gnl|Mm7|chrX (75843916-75844711)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-805, gnl|bosTau2|chr23 (18991881-18992654)
               

               
               35-805, gnl|Hg17|chr13 (65260610-65259815)
               

               
               35-805, gnl|Mm7|chrX (75843916-75844711)

	604-723, BP160138 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP160138.1\|), blast E-value=0, identity=100%
	604-723, BP467394 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA (dbj\|BP467394.1\|), blast E-value=2e-31, identity=90%
	604-723, BP480115 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA (dbj\|BP480115.1\|), blast E-value=2e-31, identity=90%
	604-723, UI-R-DZ0-crm-p-02-0-UI.s1 NCI_CGAP_DZ0 Rattus norvegicus cDNA clone (gb\|CB325145.1\|), blast E-value=4e-32, identity=90%
	604-723, AGENCOURT_66815486 NIH_MGC_365 Rattus norvegicus cDNA clone (gb\|DY314885.1\|), blast E-value=2e-31, identity=90%
	604-723, AGENCOURT_66889057 NIH_MGC_365 Rattus norvegicus cDNA clone (gb\|DY315637.1\|), blast E-value=2e-31, identity=90%

	35-805, gnl\|bosTau2\|chr23 (18991881-18992654)
	35-805, gnl\|Hg17\|chr13 (65260610-65259815)
	35-805, gnl\|Mm7\|chrX (75843916-75844711)