Non-Coding RNA Search

Thy1-THY010093H05

Sequence:


               
               TTAATTTTGCCTTCAACATTTTGCAGCGTCTGTTGAGATTTTTAGACATCCTTATTTAAG
GATTGAGTCTAATACAAACAGACTTTCTCCTCTCAGTAAAAAGTACATGATTCTCATTCG
TGGCTCTTATTTTCTTATCTTGGCTCAGAAATGCCTCAAGTAAGCAAACCCAGAAGCCAG
CTCACAGTCTTAGGGAGCCAAAGCCTTCTTGGGAACACATGCATTCCTACCACTGTCTAC
CCTTGCGCTTCAAACATCCCTGCACTCTTCCTTCTCCAAAACAGAATAAAAATTCCATCA
TTCTGAAAAGGCATGCCTGTATTTCTGTGGAAAGTAAAAAAATCCTTTTCAAGGAAGTTT
AATACCAAAGTTTTAAAAATCCACCAAGGGATAACAAAAACACTGATGGACTTGTTCGTA
CTGTTCTAGCACCTAGAAATCTGGTGGTGTGGGTGCCAGCCACAGATGGATGAAGTCCCT
TACAGTAGACTCACTAGCCAGGTAAAAGGAACACTCTGGAAGTTTGTTTGCCTTCAGTAT
GATTAATGATAGGGCCGGGCTCCTGTCACATGTAGGTAGCCAACAACAGGCCTGCGTTTG
TCTTGGTGAGGAAACAGTCCTGGCATTCAGGTTGTATATTATTTTCAGAAGGGACAAGTC
ACTCAGGAAATCTCTGGTCTCTGCCCTTAAACAGATTGTAGGGGAGAAATATCCNATATT
CATGGAACTTCTGGCAGCTAGGCAGCTAAATATAGTCTCCCTCACGAACAAAGACCAAAG
GTAGTCAGTAAGCTGCTAAATATCAGTATACAGAATGCATTTTGGGGAGTTCCCATCATG
GCGCAGAGGAGGTAAATCTGACTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAATTTTGCCTTCAACATTTTGCAGCGTCTGTTGAGATTTTTAGACATCCTTATTTAAG
GATTGAGTCTAATACAAACAGACTTTCTCCTCTCAGTAAAAAGTACATGATTCTCATTCG
TGGCTCTTATTTTCTTATCTTGGCTCAGAAATGCCTCAAGTAAGCAAACCCAGAAGCCAG
CTCACAGTCTTAGGGAGCCAAAGCCTTCTTGGGAACACATGCATTCCTACCACTGTCTAC
CCTTGCGCTTCAAACATCCCTGCACTCTTCCTTCTCCAAAACAGAATAAAAATTCCATCA
TTCTGAAAAGGCATGCCTGTATTTCTGTGGAAAGTAAAAAAATCCTTTTCAAGGAAGTTT
AATACCAAAGTTTTAAAAATCCACCAAGGGATAACAAAAACACTGATGGACTTGTTCGTA
CTGTTCTAGCACCTAGAAATCTGGTGGTGTGGGTGCCAGCCACAGATGGATGAAGTCCCT
TACAGTAGACTCACTAGCCAGGTAAAAGGAACACTCTGGAAGTTTGTTTGCCTTCAGTAT
GATTAATGATAGGGCCGGGCTCCTGTCACATGTAGGTAGCCAACAACAGGCCTGCGTTTG
TCTTGGTGAGGAAACAGTCCTGGCATTCAGGTTGTATATTATTTTCAGAAGGGACAAGTC
ACTCAGGAAATCTCTGGTCTCTGCCCTTAAACAGATTGTAGGGGAGAAATATCCNATATT
CATGGAACTTCTGGCAGCTAGGCAGCTAAATATAGTCTCCCTCACGAACAAAGACCAAAG
GTAGTCAGTAAGCTGCTAAATATCAGTATACAGAATGCATTTTGGGGAGTTCCCATCATG
GCGCAGAGGAGGTAAATCTGACTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               670-788, - strand, RNAz p=0.765312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               670-788, - strand, RNAz p=0.765312

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-384, gnl|bosTau2|chr14 (12797625-12798025)
               

               
               1-384, gnl|Hg17|chr8 (59949729-59949335)
               

               
               1-384, gnl|Mm7|chr4 (6690125-6689732)
               


               
               388-788, gnl|bosTau2|chr14 (12798169-12798563)
               

               
               388-788, gnl|Hg17|chr8 (59949318-59948891)
               

               
               388-788, gnl|Mm7|chr4 (6689698-6689289)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr14 (12797625-12798025)
               

               
               1-384, gnl|Hg17|chr8 (59949729-59949335)
               

               
               1-384, gnl|Mm7|chr4 (6690125-6689732)
               


               
               388-788, gnl|bosTau2|chr14 (12798169-12798563)
               

               
               388-788, gnl|Hg17|chr8 (59949318-59948891)
               

               
               388-788, gnl|Mm7|chr4 (6689698-6689289)

	1-384, gnl\|bosTau2\|chr14 (12797625-12798025)
	1-384, gnl\|Hg17\|chr8 (59949729-59949335)
	1-384, gnl\|Mm7\|chr4 (6690125-6689732)

	388-788, gnl\|bosTau2\|chr14 (12798169-12798563)
	388-788, gnl\|Hg17\|chr8 (59949318-59948891)
	388-788, gnl\|Mm7\|chr4 (6689698-6689289)