Non-Coding RNA Search

Thy1-THY010094H05

Sequence:


               
               GTGCCCAGAGACACTGGGTGGCAGAAACCACTATTTGGGGCCACCTTCTGAATTTCATCA
AGTTCTAGACCATGTAAATGCAGTCACAGGTAAATTTTTAGTAAATCTTGTTCTCTGGAA
TCATTTCAAAACAAAGAGAAATGATCAAGAATTTTTGTTGTTATTATAATGTAGGGAGAC
TAAATAAACCTAAAATGAGTACATCAAGCTATTTTGTATTCTCATTATATAGAAACTTCT
GCAAAGTATGTAATTGATAAAACAAGTTACTGTACAGCCATCTCCTCATTAGAATATTAG
GTACACCCATTTAATTTTCTGACAAAGACATGAATGCCACCATTTTACTGATCCTAAAGG
CCTGCATTCTAGAACTTTCTTCATTGAGTTTTGGAGAGATGGGAAATGCAGTCTTTCTCA
AGTTGAGGCTCCTGATTTTCTCAGTGTTAACAATGGGCCCTATTATGCTGCTTCCAACTG
AGCAAGACTGGGAAGAACTTCACAGCTGGCTGGGCACCTGACATGCCCAAGGCAGGTGCT
CTGACCTGCTCATACAGCCCTGGTTCCTCCTGGGGAGAATAGCAGTTTCTACTCCCTGAA
GTGCCTAATTTATTCCAGGCTATGAATAGAATGAGCTTGTTGATCTGGGACTAGTGGCAT
TCCCGTTGCACAACCTCGGGACATGATTATCCACGCCAGGGTCAGGTGGGAGCTTCCCAT
CTGACCCTGTGCAGTCCTCACCCGGGGCACTTAACAAGAGTGATAAGAGGCTTTTGAAAT
GGCACATTCCCTCACATTTATNTATATTTTTAATAANGTACTGACATCCTCTTTTGCTTA
TACNAGCCTGACTTTCTAGTAACTTGGTCACAAAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCCAGAGACACTGGGTGGCAGAAACCACTATTTGGGGCCACCTTCTGAATTTCATCA
AGTTCTAGACCATGTAAATGCAGTCACAGGTAAATTTTTAGTAAATCTTGTTCTCTGGAA
TCATTTCAAAACAAAGAGAAATGATCAAGAATTTTTGTTGTTATTATAATGTAGGGAGAC
TAAATAAACCTAAAATGAGTACATCAAGCTATTTTGTATTCTCATTATATAGAAACTTCT
GCAAAGTATGTAATTGATAAAACAAGTTACTGTACAGCCATCTCCTCATTAGAATATTAG
GTACACCCATTTAATTTTCTGACAAAGACATGAATGCCACCATTTTACTGATCCTAAAGG
CCTGCATTCTAGAACTTTCTTCATTGAGTTTTGGAGAGATGGGAAATGCAGTCTTTCTCA
AGTTGAGGCTCCTGATTTTCTCAGTGTTAACAATGGGCCCTATTATGCTGCTTCCAACTG
AGCAAGACTGGGAAGAACTTCACAGCTGGCTGGGCACCTGACATGCCCAAGGCAGGTGCT
CTGACCTGCTCATACAGCCCTGGTTCCTCCTGGGGAGAATAGCAGTTTCTACTCCCTGAA
GTGCCTAATTTATTCCAGGCTATGAATAGAATGAGCTTGTTGATCTGGGACTAGTGGCAT
TCCCGTTGCACAACCTCGGGACATGATTATCCACGCCAGGGTCAGGTGGGAGCTTCCCAT
CTGACCCTGTGCAGTCCTCACCCGGGGCACTTAACAAGAGTGATAAGAGGCTTTTGAAAT
GGCACATTCCCTCACATTTATNTATATTTTTAATAANGTACTGACATCCTCTTTTGCTTA
TACNAGCCTGACTTTCTAGTAACTTGGTCACAAAAAGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               453-612, - strand, RNAz p=0.956677
               

               
               653-801, - strand, RNAz p=0.999852

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-612, - strand, RNAz p=0.956677
               

               
               653-801, - strand, RNAz p=0.999852

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               683-766, + strand, RNAmicro p=0.999989
               

               
               699-749, - strand, RNAmicro p=0.910073

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               683-766, + strand, RNAmicro p=0.999989
               

               
               699-749, - strand, RNAmicro p=0.910073

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               653-801, BP168599 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP168599.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               653-801, BP168599 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP168599.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-878, gnl|bosTau2|chr7 (66501807-66502667)
               

               
               22-878, gnl|Hg17|chr5 (107483510-107482704)
               

               
               22-878, gnl|Mm7|chr17 (61509983-61509185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-878, gnl|bosTau2|chr7 (66501807-66502667)
               

               
               22-878, gnl|Hg17|chr5 (107483510-107482704)
               

               
               22-878, gnl|Mm7|chr17 (61509983-61509185)

	453-612, - strand, RNAz p=0.956677
	653-801, - strand, RNAz p=0.999852

	683-766, + strand, RNAmicro p=0.999989
	699-749, - strand, RNAmicro p=0.910073

	22-878, gnl\|bosTau2\|chr7 (66501807-66502667)
	22-878, gnl\|Hg17\|chr5 (107483510-107482704)
	22-878, gnl\|Mm7\|chr17 (61509983-61509185)