Non-Coding RNA Search

Thy1-THY010095C11

Sequence:


               
               ACATGTTCTAAATTGTTACTGGAAAGTAAGGACAAAGCTACAGAACTGTTTAAAAGTTTG
CTTTTGATTGCTGACTTTTTTATGGTTTTGCTTTGTTTTTGCTGCCTACAGCTGTTGGTT
TTTACTGTATCTTGAAGACTATATAGTATTATGTTACTTATGTTTGTATGTAGTGTTTTT
TTTTTAAGTCCAGGATACAGAATTCAATGAAGTAGGAAGCAGAACTTTTTTATCCACTTA
CAAGGTTGCCAGTGTAAAGTGGCATGTATTCTTTTAGTCATTTTCTTTGGATATATATGA
TTTACTATACTCATGGAATCAGAGTATATATGCTATTATGTAACTTGAGAAGAGTTTTTC
AGTTTTTGGATCTAATGTGAGATGAGGCTTAAAAGAATTCAGAATGCAGCTAAAAGGATT
TTGAAGCTGAACTTTTTTTGAGTCTGAGTATAGAACTTTTTGCTTATTACTCTTTATCAT
TTAACAGCATAAATCTTTTCTCCAGTGTTTAGTAAACATCAATTTCTTGTTCCATTGCAA
GTCTGAGTTACTTTAATTGTAAAACAACATACAATTAGAGGGGGTTTTTTGGGCAGAGAA
CGGATAAAAGTCTCTGCTTTCCAGACTTAACAGTTGTTCATTTACTCCTTTATCCTTCCG
GAAATTTCAGTGCATATAAAACGTATGTACCATTCTCTTCACCTCAAATGATAAAGCTGT
ATTTTTTTCCCACTTAGCCCTGCAATATATCTTCAATACCTTTCTGTATCAGGATATATT
TTTTGCCAAAATTTTTTGAATATCTGATAGTATTCCATTTACTCAGTCCCCTTTTATTGG
ATATTTGCAGTGTTGCCTCAACCTCTGTGTTTTTTCATATCTTCATATGTTGTAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGTTCTAAATTGTTACTGGAAAGTAAGGACAAAGCTACAGAACTGTTTAAAAGTTTG
CTTTTGATTGCTGACTTTTTTATGGTTTTGCTTTGTTTTTGCTGCCTACAGCTGTTGGTT
TTTACTGTATCTTGAAGACTATATAGTATTATGTTACTTATGTTTGTATGTAGTGTTTTT
TTTTTAAGTCCAGGATACAGAATTCAATGAAGTAGGAAGCAGAACTTTTTTATCCACTTA
CAAGGTTGCCAGTGTAAAGTGGCATGTATTCTTTTAGTCATTTTCTTTGGATATATATGA
TTTACTATACTCATGGAATCAGAGTATATATGCTATTATGTAACTTGAGAAGAGTTTTTC
AGTTTTTGGATCTAATGTGAGATGAGGCTTAAAAGAATTCAGAATGCAGCTAAAAGGATT
TTGAAGCTGAACTTTTTTTGAGTCTGAGTATAGAACTTTTTGCTTATTACTCTTTATCAT
TTAACAGCATAAATCTTTTCTCCAGTGTTTAGTAAACATCAATTTCTTGTTCCATTGCAA
GTCTGAGTTACTTTAATTGTAAAACAACATACAATTAGAGGGGGTTTTTTGGGCAGAGAA
CGGATAAAAGTCTCTGCTTTCCAGACTTAACAGTTGTTCATTTACTCCTTTATCCTTCCG
GAAATTTCAGTGCATATAAAACGTATGTACCATTCTCTTCACCTCAAATGATAAAGCTGT
ATTTTTTTCCCACTTAGCCCTGCAATATATCTTCAATACCTTTCTGTATCAGGATATATT
TTTTGCCAAAATTTTTTGAATATCTGATAGTATTCCATTTACTCAGTCCCCTTTTATTGG
ATATTTGCAGTGTTGCCTCAACCTCTGTGTTTTTTCATATCTTCATATGTTGTAGGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-147, + strand, RNAz p=0.891177
               

               
               686-835, - strand, RNAz p=0.914784

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-147, + strand, RNAz p=0.891177
               

               
               686-835, - strand, RNAz p=0.914784

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-179, gnl|bosTau2|chr7 (18725321-18725142)
               

               
               2-179, gnl|Hg17|chr5 (130833517-130833338)
               

               
               2-179, gnl|Mm7|chr11 (54608390-54608563)
               


               
               306-899, gnl|bosTau2|chr7 (18725070-18724472)
               

               
               306-899, gnl|Hg17|chr5 (130833193-130832589)
               

               
               306-899, gnl|Mm7|chr11 (54608698-54609543)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-179, gnl|bosTau2|chr7 (18725321-18725142)
               

               
               2-179, gnl|Hg17|chr5 (130833517-130833338)
               

               
               2-179, gnl|Mm7|chr11 (54608390-54608563)
               


               
               306-899, gnl|bosTau2|chr7 (18725070-18724472)
               

               
               306-899, gnl|Hg17|chr5 (130833193-130832589)
               

               
               306-899, gnl|Mm7|chr11 (54608698-54609543)

	2-147, + strand, RNAz p=0.891177
	686-835, - strand, RNAz p=0.914784

	2-179, gnl\|bosTau2\|chr7 (18725321-18725142)
	2-179, gnl\|Hg17\|chr5 (130833517-130833338)
	2-179, gnl\|Mm7\|chr11 (54608390-54608563)

	306-899, gnl\|bosTau2\|chr7 (18725070-18724472)
	306-899, gnl\|Hg17\|chr5 (130833193-130832589)
	306-899, gnl\|Mm7\|chr11 (54608698-54609543)