Non-Coding RNA Search

Thy1-THY010097A11

Sequence:


               
               TTTTGGATCCATCTCCTAAAACAAAGGAAATAAAAGCATTCCACTTGGTTTAAGTTGGGT
CTTTTCTCTAAGTGCTCTTAGTTATATATGTTTCCAAGTGTCTTTCTTTTTCTTAAGTTC
TAATGTTTTGGATAATTACTTACCAAACTTATGTGTGAATTTCAAATCAGAAAACAGAGA
ACATATCACAGGTTTTATCAAGTCCTCACCTAAAAAGGATTGGTGGGGGAAGAATAGCAT
TCTGTCGGAGATGGAGTTCTAAAGGAACATTGATTTTTGTGGACAGGGCGCTGTCTGGAT
GGGAATCAGAGAGCTGAATACAGTCCCAACTTTGCTACTCCCTTAAATACTGGTGTGATT
TCAGCAGATCACCTTATTCTCTTTGCTACTGTTCCCCCCTCTGTAAAATGAGGCTGGATT
AGGTGGTCTAAAGGGCCATTGCAGATTACCTAATCCTATAGCTTGTTTTGTATTGTCAGG
ATTTCATATTCTTGAAGTCCAGAGTTGACAAATAAGGTGTGGGAAGAAATGCCACAGTCT
TGAATAATCCAAATGGATTTTGTCCAACCTTGTGTGCTTATCCCCAAAGAAGAAGAAAAT
GCAAACGAGCCAGGGGGCTAACGTGAAAATGGTCACCGTGTGGAGAACATTGAAGCAGAC
AGCTGAAAGCTGCATTTCCTGGCCGGCCTGCCATGGGAAAGGCTGAGACTGCCAAAGCCT
CCAGGCAATCAAGGCCAGAACTTTGGCTTGCTCTTACTTTGAGCTACCCCCATACCACAC
ACACAAACCACACAGGAAAATTGTCTGTCNTCCTTCATATTTGTACATTTTGGCTACACT
TCTATTTATGCCAAGCTCTCGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGATCCATCTCCTAAAACAAAGGAAATAAAAGCATTCCACTTGGTTTAAGTTGGGT
CTTTTCTCTAAGTGCTCTTAGTTATATATGTTTCCAAGTGTCTTTCTTTTTCTTAAGTTC
TAATGTTTTGGATAATTACTTACCAAACTTATGTGTGAATTTCAAATCAGAAAACAGAGA
ACATATCACAGGTTTTATCAAGTCCTCACCTAAAAAGGATTGGTGGGGGAAGAATAGCAT
TCTGTCGGAGATGGAGTTCTAAAGGAACATTGATTTTTGTGGACAGGGCGCTGTCTGGAT
GGGAATCAGAGAGCTGAATACAGTCCCAACTTTGCTACTCCCTTAAATACTGGTGTGATT
TCAGCAGATCACCTTATTCTCTTTGCTACTGTTCCCCCCTCTGTAAAATGAGGCTGGATT
AGGTGGTCTAAAGGGCCATTGCAGATTACCTAATCCTATAGCTTGTTTTGTATTGTCAGG
ATTTCATATTCTTGAAGTCCAGAGTTGACAAATAAGGTGTGGGAAGAAATGCCACAGTCT
TGAATAATCCAAATGGATTTTGTCCAACCTTGTGTGCTTATCCCCAAAGAAGAAGAAAAT
GCAAACGAGCCAGGGGGCTAACGTGAAAATGGTCACCGTGTGGAGAACATTGAAGCAGAC
AGCTGAAAGCTGCATTTCCTGGCCGGCCTGCCATGGGAAAGGCTGAGACTGCCAAAGCCT
CCAGGCAATCAAGGCCAGAACTTTGGCTTGCTCTTACTTTGAGCTACCCCCATACCACAC
ACACAAACCACACAGGAAAATTGTCTGTCNTCCTTCATATTTGTACATTTTGGCTACACT
TCTATTTATGCCAAGCTCTCGCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               415-529, - strand, RNAz p=0.671866
               

               
               641-838, - strand, RNAz p=0.735317

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               415-529, - strand, RNAz p=0.671866
               

               
               641-838, - strand, RNAz p=0.735317

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               814-908, - strand, RNAmicro p=0.90121

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               814-908, - strand, RNAmicro p=0.90121

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               211-864, gnl|bosTau2|chr15 (5460481-5459832)
               

               
               211-864, gnl|Hg17|chr14 (67679465-67680158)
               

               
               211-864, gnl|Mm7|chr12 (77474215-77474869)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-864, gnl|bosTau2|chr15 (5460481-5459832)
               

               
               211-864, gnl|Hg17|chr14 (67679465-67680158)
               

               
               211-864, gnl|Mm7|chr12 (77474215-77474869)

	415-529, - strand, RNAz p=0.671866
	641-838, - strand, RNAz p=0.735317

	211-864, gnl\|bosTau2\|chr15 (5460481-5459832)
	211-864, gnl\|Hg17\|chr14 (67679465-67680158)
	211-864, gnl\|Mm7\|chr12 (77474215-77474869)