Non-Coding RNA Search

Thy1-THY010098E02

Sequence:


               
               GGATTTTAAGTTCGGCGCTGAAGGCAACTTGATCTCTGTCGCTATCTCCTTTCATAGATG
ATAATTAGCACGGTTCTAGGAGACTGGCTGCAATGGATCAGCTGGAAGGAACCAACTTAA
CTGAGTTCTACCCAAGGATGACAGCAGTGGTTCTGTGCAGAATGGTGCATGGCAGTAACA
TACAGGAGATAATTGGTTACAGGCATTCACTGAGTGGTGAGACAACCTAATATTCAGCTC
CAGGGTTCTTTGAAAAGAAAACAGATCGTTAACCTGCCTCCTGCCAACAACAAGAGGCCC
AATGGCTTTGTTGACAACTCATTCCTTGATATCAAGAGAATCCGTGTCGGGGAAAACCTG
GCTGCGGGACAAGGGGCCCTCCAAGTGAATAATGGACAAAGTCAGATTATGTCGGGGACC
TTGCCCATGAGCCAAGCGCCCCTGAGAAAGACTGCCACTCTGCCACCACACACACATTCT
CCTGGAAACGGAATGTTCAACATGGGCTTGAAGGAAGTGAAGAAGGAACCGGGAGAGACC
CTCTCTTGTAGCAAGCACGCCGATGGCCAGGTGAGCCAGGAGAATATATTTCCTAACAGG
TACGGAGATGATCCTGGGGAGCAGCTGATGGATCCGGAGCTGCAGGAACTGTTCAATGAA
CTGACCAACATATCTGTGCCGCCCATGAGTGACCTTGAGCTGGAGAACATGATCAATGCC
ACCATAAAGCAGGATGACCCGTTTAACATTGACCTGAATCAGCAAAGTCAGAGGAGCACC
CCCAGGCCGTCCTTGCCAATGGAGAAGACCGTGATCAAAAGTGAATACTCCCCAGGCCTG
ACCCAGGGCCCCTCGGGCTCTCCCCAGTTGAGGCCCTCATCAACTGGCCCGGCGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTTAAGTTCGGCGCTGAAGGCAACTTGATCTCTGTCGCTATCTCCTTTCATAGATG
ATAATTAGCACGGTTCTAGGAGACTGGCTGCAATGGATCAGCTGGAAGGAACCAACTTAA
CTGAGTTCTACCCAAGGATGACAGCAGTGGTTCTGTGCAGAATGGTGCATGGCAGTAACA
TACAGGAGATAATTGGTTACAGGCATTCACTGAGTGGTGAGACAACCTAATATTCAGCTC
CAGGGTTCTTTGAAAAGAAAACAGATCGTTAACCTGCCTCCTGCCAACAACAAGAGGCCC
AATGGCTTTGTTGACAACTCATTCCTTGATATCAAGAGAATCCGTGTCGGGGAAAACCTG
GCTGCGGGACAAGGGGCCCTCCAAGTGAATAATGGACAAAGTCAGATTATGTCGGGGACC
TTGCCCATGAGCCAAGCGCCCCTGAGAAAGACTGCCACTCTGCCACCACACACACATTCT
CCTGGAAACGGAATGTTCAACATGGGCTTGAAGGAAGTGAAGAAGGAACCGGGAGAGACC
CTCTCTTGTAGCAAGCACGCCGATGGCCAGGTGAGCCAGGAGAATATATTTCCTAACAGG
TACGGAGATGATCCTGGGGAGCAGCTGATGGATCCGGAGCTGCAGGAACTGTTCAATGAA
CTGACCAACATATCTGTGCCGCCCATGAGTGACCTTGAGCTGGAGAACATGATCAATGCC
ACCATAAAGCAGGATGACCCGTTTAACATTGACCTGAATCAGCAAAGTCAGAGGAGCACC
CCCAGGCCGTCCTTGCCAATGGAGAAGACCGTGATCAAAAGTGAATACTCCCCAGGCCTG
ACCCAGGGCCCCTCGGGCTCTCCCCAGTTGAGGCCCTCATCAACTGGCCCGGCGTTC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               272-391, - strand, RNAz p=0.561525
               

               
               348-504, + strand, RNAz p=0.846519
               

               
               471-588, - strand, RNAz p=0.979064
               

               
               709-828, - strand, RNAz p=0.666412

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-391, - strand, RNAz p=0.561525
               

               
               348-504, + strand, RNAz p=0.846519
               

               
               471-588, - strand, RNAz p=0.979064
               

               
               709-828, - strand, RNAz p=0.666412

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               100-219, gnl|bosTau2|chr11 (27936152-27936027)
               

               
               100-219, gnl|Hg17|chr11 (95664988-95664856)
               

               
               100-219, gnl|Mm7|chr9 (13275207-13275330)
               


               
               233-897, gnl|bosTau2|chr15 (4427673-4428340)
               

               
               233-897, gnl|canFam2|chr21 (8055992-8055393)
               

               
               233-897, gnl|danRer3|chr15 (6679706-6679152)
               

               
               233-897, gnl|echTel1|scaffold_311066 (178745-178146)
               

               
               233-897, gnl|fr1|chrUn (142826015-142826536)
               

               
               233-897, gnl|galGal2|chr1 (176896243-176895644)
               

               
               233-897, gnl|hg17|chr11 (95465491-95466090)
               

               
               233-897, gnl|Hg17|chr11 (95466334-95465670)
               

               
               233-897, gnl|loxAfr1|scaffold_2949 (52513-53112)
               

               
               233-897, gnl|mm7|chr9 (13457471-13456872)
               

               
               233-897, gnl|Mm7|chr9 (13456626-13457290)
               

               
               233-897, gnl|monDom2|scaffold_15 (1017208-1016606)
               

               
               233-897, gnl|oryCun1|scaffold_198422 (195059-194460)
               

               
               233-897, gnl|panTro1|chr9 (97383846-97384445)
               

               
               233-897, gnl|rheMac2|chr14 (94650271-94650870)
               

               
               233-897, gnl|rn3|chr8 (10390314-10389724)
               

               
               233-897, gnl|xenTro1|scaffold_123 (1955929-1955351)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-219, gnl|bosTau2|chr11 (27936152-27936027)
               

               
               100-219, gnl|Hg17|chr11 (95664988-95664856)
               

               
               100-219, gnl|Mm7|chr9 (13275207-13275330)
               


               
               233-897, gnl|bosTau2|chr15 (4427673-4428340)
               

               
               233-897, gnl|canFam2|chr21 (8055992-8055393)
               

               
               233-897, gnl|danRer3|chr15 (6679706-6679152)
               

               
               233-897, gnl|echTel1|scaffold_311066 (178745-178146)
               

               
               233-897, gnl|fr1|chrUn (142826015-142826536)
               

               
               233-897, gnl|galGal2|chr1 (176896243-176895644)
               

               
               233-897, gnl|hg17|chr11 (95465491-95466090)
               

               
               233-897, gnl|Hg17|chr11 (95466334-95465670)
               

               
               233-897, gnl|loxAfr1|scaffold_2949 (52513-53112)
               

               
               233-897, gnl|mm7|chr9 (13457471-13456872)
               

               
               233-897, gnl|Mm7|chr9 (13456626-13457290)
               

               
               233-897, gnl|monDom2|scaffold_15 (1017208-1016606)
               

               
               233-897, gnl|oryCun1|scaffold_198422 (195059-194460)
               

               
               233-897, gnl|panTro1|chr9 (97383846-97384445)
               

               
               233-897, gnl|rheMac2|chr14 (94650271-94650870)
               

               
               233-897, gnl|rn3|chr8 (10390314-10389724)
               

               
               233-897, gnl|xenTro1|scaffold_123 (1955929-1955351)

	272-391, - strand, RNAz p=0.561525
	348-504, + strand, RNAz p=0.846519
	471-588, - strand, RNAz p=0.979064
	709-828, - strand, RNAz p=0.666412

	100-219, gnl\|bosTau2\|chr11 (27936152-27936027)
	100-219, gnl\|Hg17\|chr11 (95664988-95664856)
	100-219, gnl\|Mm7\|chr9 (13275207-13275330)

	233-897, gnl\|bosTau2\|chr15 (4427673-4428340)
	233-897, gnl\|canFam2\|chr21 (8055992-8055393)
	233-897, gnl\|danRer3\|chr15 (6679706-6679152)
	233-897, gnl\|echTel1\|scaffold_311066 (178745-178146)
	233-897, gnl\|fr1\|chrUn (142826015-142826536)
	233-897, gnl\|galGal2\|chr1 (176896243-176895644)
	233-897, gnl\|hg17\|chr11 (95465491-95466090)
	233-897, gnl\|Hg17\|chr11 (95466334-95465670)
	233-897, gnl\|loxAfr1\|scaffold_2949 (52513-53112)
	233-897, gnl\|mm7\|chr9 (13457471-13456872)
	233-897, gnl\|Mm7\|chr9 (13456626-13457290)
	233-897, gnl\|monDom2\|scaffold_15 (1017208-1016606)
	233-897, gnl\|oryCun1\|scaffold_198422 (195059-194460)
	233-897, gnl\|panTro1\|chr9 (97383846-97384445)
	233-897, gnl\|rheMac2\|chr14 (94650271-94650870)
	233-897, gnl\|rn3\|chr8 (10390314-10389724)
	233-897, gnl\|xenTro1\|scaffold_123 (1955929-1955351)