Non-Coding RNA Search

Thy1-THY010098F12

Sequence:


               
               TATATTCATTTAGGCAAATTTCCATCCTATGCTGGCATAATCACTATTCCTTTTGTTGGT
CATTGCTCCCCTGGGCTTTCCTCAAACATGGTCAGAGTTGCCCTGGACTTTTTAAAGATG
GAAGAAAGGCCACATGGCCCTGCATAATTTGACCGAGACAGCTGTGCAGTTGGTTGTCTC
ATTTAAATTACAACCACAAAAAAAGATGTGCCAGGCTTCATGGACACAAGGCTAAGGGCA
GGAACACGAAACGGTTTCCTGAACCTGCCCTGGGTTAGTGCCAAAGGTAAGCAGCCATGC
TCAGCGGGGTCTCTTGGACCACTGAAGAGGCAATAAGCTTCACTAAAACAATTATCCCTC
CCTAGGCCTCTTCTAAAGGTTTGCACCTCCCAATTCTCAGGGTAAGGAGCTGTCTGGCTC
TTCATTCCAGCTTGGAATGGCTGACCTAGGCAGGAAGTCACAGACAAGTCTTCTGAGAGT
TAGGAAGAAAAACCAAGATGTGAGATTTAAAAGGCTGGTGTGGCAAAGGTTCGTCCTCAC
AGATGGTGGCTCAGATTTAGAGAAACCCCTAACTGATTTGCTGAAGTTTGAGCGCCCAAA
CCTTGTAACCACAGACCACGGAGGCATTCATGAGACCTGACAAGCCTACTTTTAATACAG
AACCTGGTACAAAGTTTCATTGTGTTTTTTCACTGTGGGTTTTTTTTTTTTTTTTTCCTC
CTATATCTTTTGGAATTGAATCTGATAGCCCAAAGGGTGGCTTTCACATGCAATATTTCC
CTTTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATTCATTTAGGCAAATTTCCATCCTATGCTGGCATAATCACTATTCCTTTTGTTGGT
CATTGCTCCCCTGGGCTTTCCTCAAACATGGTCAGAGTTGCCCTGGACTTTTTAAAGATG
GAAGAAAGGCCACATGGCCCTGCATAATTTGACCGAGACAGCTGTGCAGTTGGTTGTCTC
ATTTAAATTACAACCACAAAAAAAGATGTGCCAGGCTTCATGGACACAAGGCTAAGGGCA
GGAACACGAAACGGTTTCCTGAACCTGCCCTGGGTTAGTGCCAAAGGTAAGCAGCCATGC
TCAGCGGGGTCTCTTGGACCACTGAAGAGGCAATAAGCTTCACTAAAACAATTATCCCTC
CCTAGGCCTCTTCTAAAGGTTTGCACCTCCCAATTCTCAGGGTAAGGAGCTGTCTGGCTC
TTCATTCCAGCTTGGAATGGCTGACCTAGGCAGGAAGTCACAGACAAGTCTTCTGAGAGT
TAGGAAGAAAAACCAAGATGTGAGATTTAAAAGGCTGGTGTGGCAAAGGTTCGTCCTCAC
AGATGGTGGCTCAGATTTAGAGAAACCCCTAACTGATTTGCTGAAGTTTGAGCGCCCAAA
CCTTGTAACCACAGACCACGGAGGCATTCATGAGACCTGACAAGCCTACTTTTAATACAG
AACCTGGTACAAAGTTTCATTGTGTTTTTTCACTGTGGGTTTTTTTTTTTTTTTTTCCTC
CTATATCTTTTGGAATTGAATCTGATAGCCCAAAGGGTGGCTTTCACATGCAATATTTCC
CTTTTTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-345, - strand, RNAz p=0.976622
               

               
               384-500, - strand, RNAz p=0.546833

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-345, - strand, RNAz p=0.976622
               

               
               384-500, - strand, RNAz p=0.546833

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-788, gnl|bosTau2|chr7 (47705920-47705153)
               

               
               1-788, gnl|Hg17|chr5 (158412649-158411870)
               

               
               1-788, gnl|Mm7|chr11 (44620376-44621117)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr7 (47705920-47705153)
               

               
               1-788, gnl|Hg17|chr5 (158412649-158411870)
               

               
               1-788, gnl|Mm7|chr11 (44620376-44621117)

	79-345, - strand, RNAz p=0.976622
	384-500, - strand, RNAz p=0.546833

	1-788, gnl\|bosTau2\|chr7 (47705920-47705153)
	1-788, gnl\|Hg17\|chr5 (158412649-158411870)
	1-788, gnl\|Mm7\|chr11 (44620376-44621117)