Non-Coding RNA Search

Thy1-THY010100A09

Sequence:


               
               AAGCGCCACGCGGAGCCGGCGTCGCGCCATGCCCACAGGTCGTTGCCCTCGATGCAAGGG
GCCCGCTCTGGGCTTTCCTTCCGTCCGAATGACACTTGGTTCTAGTTGCTCTTGCTCGGC
GGGAGTTGACCCAGGAGCTGGAAGCTTGCTTGCAAGTGCGGGCTCTGTTGTCCTTCATTT
GCTCCTCTCCTTTCTTGTCTTTGTAGGTTGCTCCCATCTGCTCCAGAGGCAGTGGCTTTG
AGGTGTGACCCTGTCCACGCTTGGGCCCAGCCAGCGCCAGCTCCTCGGTAAAGAGGAGCC
AGCTTGATAAGACGAAGAAAACAGGTCAGTGCAACTTTATTGACTTTCTTGAGTCACAGT
GACTTTGAATGTTGTCTTCTCTCCCCTCCCCACGTCCTGTCAAGTGGCCTGCCCTCTGCT
CGGGGTCCTCCCGAGGCTTTGGTGCAAAACCACGGTGAGACTCTCGCTGTGAACTGTGAA
CTGCTGGCTCTCCCTGACCCAGCGGCCTGGGTGCCCGATGAGAAGTCTCGGAAAGGGTGC
CCAGGGCCTGGCTCACAGGAGGCAATGCTGCAGCGGCCCCGTGCCCTGCGTCTCCCTTCC
CACCCCCGGATTCCCACCCGCTGTGCTCGGAACCGGAGCACAGGCCAGCCTGCTTGGCCA
GTGGAGGTGACGGTTTCCTTTCGCGTCCGTGGTCTGCGTTTCCTGTCGTCTCTGGGCCCC
GCTGGAGGACGTGATAGCCAAATGGGGGCCAGTGATTTTTCTTTTGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCGCCACGCGGAGCCGGCGTCGCGCCATGCCCACAGGTCGTTGCCCTCGATGCAAGGG
GCCCGCTCTGGGCTTTCCTTCCGTCCGAATGACACTTGGTTCTAGTTGCTCTTGCTCGGC
GGGAGTTGACCCAGGAGCTGGAAGCTTGCTTGCAAGTGCGGGCTCTGTTGTCCTTCATTT
GCTCCTCTCCTTTCTTGTCTTTGTAGGTTGCTCCCATCTGCTCCAGAGGCAGTGGCTTTG
AGGTGTGACCCTGTCCACGCTTGGGCCCAGCCAGCGCCAGCTCCTCGGTAAAGAGGAGCC
AGCTTGATAAGACGAAGAAAACAGGTCAGTGCAACTTTATTGACTTTCTTGAGTCACAGT
GACTTTGAATGTTGTCTTCTCTCCCCTCCCCACGTCCTGTCAAGTGGCCTGCCCTCTGCT
CGGGGTCCTCCCGAGGCTTTGGTGCAAAACCACGGTGAGACTCTCGCTGTGAACTGTGAA
CTGCTGGCTCTCCCTGACCCAGCGGCCTGGGTGCCCGATGAGAAGTCTCGGAAAGGGTGC
CCAGGGCCTGGCTCACAGGAGGCAATGCTGCAGCGGCCCCGTGCCCTGCGTCTCCCTTCC
CACCCCCGGATTCCCACCCGCTGTGCTCGGAACCGGAGCACAGGCCAGCCTGCTTGGCCA
GTGGAGGTGACGGTTTCCTTTCGCGTCCGTGGTCTGCGTTTCCTGTCGTCTCTGGGCCCC
GCTGGAGGACGTGATAGCCAAATGGGGGCCAGTGATTTTTCTTTTGTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               476-574, - strand, RNAz p=0.616177

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-574, - strand, RNAz p=0.616177

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               184-768, gnl|bosTau2|chr23 (35007876-35007289)
               

               
               184-768, gnl|Hg17|chr6 (7121865-7123400)
               

               
               184-768, gnl|Mm7|chr13 (37306669-37307344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-768, gnl|bosTau2|chr23 (35007876-35007289)
               

               
               184-768, gnl|Hg17|chr6 (7121865-7123400)
               

               
               184-768, gnl|Mm7|chr13 (37306669-37307344)

	184-768, gnl\|bosTau2\|chr23 (35007876-35007289)
	184-768, gnl\|Hg17\|chr6 (7121865-7123400)
	184-768, gnl\|Mm7\|chr13 (37306669-37307344)