Non-Coding RNA Search

Thy1-THY010103C09

Sequence:


               
               AAAACGGCTGGTCCGGTCGGAATCTCAGCACGTGGCCTACTGGAGCCCCCTGTCCACCCT
GGCCACATCACCACAACAAGCCTGCCGCCCCAGATCAGCAGCATCATCCAGGGGCAGCTG
ANTCAGCAGCAGCAGGTGCTGCAGGGACCACCGCTGACCAGACCTCTGCTCCCTGGAGTC
GGGGTCGGTGTCGGGGGGGCTTCAGCATTTGGGATGACGTCCCCACCGCCCCCTACCAGC
CCTTCTAGGACTGCAGTGCCCCCTGGCCTGTCCAGCCTTCCTCTCACGTCTGCGGGGAGT
GCGGGGGTGAGAAAGGCTCCCAGGAAGTTGGAGGAGATCCCCCCAGCCTCCCAGGAGCTG
GCTCAGATGCGGAAACAGTGCCTGGACTATCACTACAGAGAGATGGAGGCGCTGAAGGAG
GCCTTCAAGGAGTATTTGATCGAACTGTTCTTCTTGCAACACCTTCAAGGGAACATGATG
GATTTCCTACCTTTTAAGAAGAAACATTATGCCCCGCCACAAGCTTATCTTAGGCAGAAT
GATTTGGACCTTGAGGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACGGCTGGTCCGGTCGGAATCTCAGCACGTGGCCTACTGGAGCCCCCTGTCCACCCT
GGCCACATCACCACAACAAGCCTGCCGCCCCAGATCAGCAGCATCATCCAGGGGCAGCTG
ANTCAGCAGCAGCAGGTGCTGCAGGGACCACCGCTGACCAGACCTCTGCTCCCTGGAGTC
GGGGTCGGTGTCGGGGGGGCTTCAGCATTTGGGATGACGTCCCCACCGCCCCCTACCAGC
CCTTCTAGGACTGCAGTGCCCCCTGGCCTGTCCAGCCTTCCTCTCACGTCTGCGGGGAGT
GCGGGGGTGAGAAAGGCTCCCAGGAAGTTGGAGGAGATCCCCCCAGCCTCCCAGGAGCTG
GCTCAGATGCGGAAACAGTGCCTGGACTATCACTACAGAGAGATGGAGGCGCTGAAGGAG
GCCTTCAAGGAGTATTTGATCGAACTGTTCTTCTTGCAACACCTTCAAGGGAACATGATG
GATTTCCTACCTTTTAAGAAGAAACATTATGCCCCGCCACAAGCTTATCTTAGGCAGAAT
GATTTGGACCTTGAGGAAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8N7S7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N7S7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               261-420, + strand, RNAz p=0.844836
               

               
               268-378, - strand, RNAz p=0.695653

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-420, + strand, RNAz p=0.844836
               

               
               268-378, - strand, RNAz p=0.695653

Aligned organism(s): 35 entry(ies)

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Aligned organism(s): 35 entry(ies)

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               40-560, gnl|bosTau2|chr17 (23713995-23713475)
               

               
               40-560, gnl|canFam2|chr26 (3941214-3940833)
               

               
               40-560, gnl|canFam2|chr26 (3941933-3940847)
               

               
               40-560, gnl|danRer3|chr8 (38280453-38280091)
               

               
               40-560, gnl|danRer3|chr8 (38281109-38280089)
               

               
               40-560, gnl|dasNov1|scaffold_53400 (3660-4041)
               

               
               40-560, gnl|dasNov1|scaffold_53400 (2929-4027)
               

               
               40-560, gnl|echTel1|scaffold_283310 (43858-44239)
               

               
               40-560, gnl|echTel1|scaffold_283310 (43118-44225)
               

               
               40-560, gnl|fr1|chrUn (247756719-247756339)
               

               
               40-560, gnl|fr1|chrUn (247757399-247756338)
               

               
               40-560, gnl|galGal2|chr15 (2590468-2590087)
               

               
               40-560, gnl|galGal2|chr15 (2591211-2590101)
               

               
               40-560, gnl|hg17|chr12 (131255672-131256053)
               

               
               40-560, gnl|hg17|chr12 (131111570-131112671)
               

               
               40-560, gnl|Hg17|chr12 (131112142-131112675)
               

               
               40-560, gnl|loxAfr1|scaffold_62507 (3110-3493)
               

               
               40-560, gnl|loxAfr1|scaffold_62507 (2377-3479)
               

               
               40-560, gnl|mm7|chr5 (109922032-109921651)
               

               
               40-560, gnl|mm7|chr5 (109922769-109921665)
               

               
               40-560, gnl|Mm7|chr5 (109922195-109921660)
               

               
               40-560, gnl|monDom2|scaffold_54 (3902081-3901697)
               

               
               40-560, gnl|monDom2|scaffold_54 (4035381-4034280)
               

               
               40-560, gnl|oryCun1|scaffold_168196 (14290-13910)
               

               
               40-560, gnl|oryCun1|scaffold_168196 (15029-13924)
               

               
               40-560, gnl|panTro1|chr10 (134298993-134299375)
               

               
               40-560, gnl|panTro1|chr10 (134153370-134154475)
               

               
               40-560, gnl|rheMac2|chr11 (133428258-133428639)
               

               
               40-560, gnl|rheMac2|chr11 (133269223-133270324)
               

               
               40-560, gnl|rn3|chr12 (45913134-45913515)
               

               
               40-560, gnl|rn3|chr12 (45912397-45913501)
               

               
               40-560, gnl|tetNig1|chrUn_random (33513682-33514062)
               

               
               40-560, gnl|tetNig1|chrUn_random (33512998-33514060)
               

               
               40-560, gnl|xenTro1|scaffold_322 (1043435-1043813)
               

               
               40-560, gnl|xenTro1|scaffold_322 (954661-955759)

Aligned organism(s): 35 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-560, gnl|bosTau2|chr17 (23713995-23713475)
               

               
               40-560, gnl|canFam2|chr26 (3941214-3940833)
               

               
               40-560, gnl|canFam2|chr26 (3941933-3940847)
               

               
               40-560, gnl|danRer3|chr8 (38280453-38280091)
               

               
               40-560, gnl|danRer3|chr8 (38281109-38280089)
               

               
               40-560, gnl|dasNov1|scaffold_53400 (3660-4041)
               

               
               40-560, gnl|dasNov1|scaffold_53400 (2929-4027)
               

               
               40-560, gnl|echTel1|scaffold_283310 (43858-44239)
               

               
               40-560, gnl|echTel1|scaffold_283310 (43118-44225)
               

               
               40-560, gnl|fr1|chrUn (247756719-247756339)
               

               
               40-560, gnl|fr1|chrUn (247757399-247756338)
               

               
               40-560, gnl|galGal2|chr15 (2590468-2590087)
               

               
               40-560, gnl|galGal2|chr15 (2591211-2590101)
               

               
               40-560, gnl|hg17|chr12 (131255672-131256053)
               

               
               40-560, gnl|hg17|chr12 (131111570-131112671)
               

               
               40-560, gnl|Hg17|chr12 (131112142-131112675)
               

               
               40-560, gnl|loxAfr1|scaffold_62507 (3110-3493)
               

               
               40-560, gnl|loxAfr1|scaffold_62507 (2377-3479)
               

               
               40-560, gnl|mm7|chr5 (109922032-109921651)
               

               
               40-560, gnl|mm7|chr5 (109922769-109921665)
               

               
               40-560, gnl|Mm7|chr5 (109922195-109921660)
               

               
               40-560, gnl|monDom2|scaffold_54 (3902081-3901697)
               

               
               40-560, gnl|monDom2|scaffold_54 (4035381-4034280)
               

               
               40-560, gnl|oryCun1|scaffold_168196 (14290-13910)
               

               
               40-560, gnl|oryCun1|scaffold_168196 (15029-13924)
               

               
               40-560, gnl|panTro1|chr10 (134298993-134299375)
               

               
               40-560, gnl|panTro1|chr10 (134153370-134154475)
               

               
               40-560, gnl|rheMac2|chr11 (133428258-133428639)
               

               
               40-560, gnl|rheMac2|chr11 (133269223-133270324)
               

               
               40-560, gnl|rn3|chr12 (45913134-45913515)
               

               
               40-560, gnl|rn3|chr12 (45912397-45913501)
               

               
               40-560, gnl|tetNig1|chrUn_random (33513682-33514062)
               

               
               40-560, gnl|tetNig1|chrUn_random (33512998-33514060)
               

               
               40-560, gnl|xenTro1|scaffold_322 (1043435-1043813)
               

               
               40-560, gnl|xenTro1|scaffold_322 (954661-955759)

	261-420, + strand, RNAz p=0.844836
	268-378, - strand, RNAz p=0.695653

	40-560, gnl\|bosTau2\|chr17 (23713995-23713475)
	40-560, gnl\|canFam2\|chr26 (3941214-3940833)
	40-560, gnl\|canFam2\|chr26 (3941933-3940847)
	40-560, gnl\|danRer3\|chr8 (38280453-38280091)
	40-560, gnl\|danRer3\|chr8 (38281109-38280089)
	40-560, gnl\|dasNov1\|scaffold_53400 (3660-4041)
	40-560, gnl\|dasNov1\|scaffold_53400 (2929-4027)
	40-560, gnl\|echTel1\|scaffold_283310 (43858-44239)
	40-560, gnl\|echTel1\|scaffold_283310 (43118-44225)
	40-560, gnl\|fr1\|chrUn (247756719-247756339)
	40-560, gnl\|fr1\|chrUn (247757399-247756338)
	40-560, gnl\|galGal2\|chr15 (2590468-2590087)
	40-560, gnl\|galGal2\|chr15 (2591211-2590101)
	40-560, gnl\|hg17\|chr12 (131255672-131256053)
	40-560, gnl\|hg17\|chr12 (131111570-131112671)
	40-560, gnl\|Hg17\|chr12 (131112142-131112675)
	40-560, gnl\|loxAfr1\|scaffold_62507 (3110-3493)
	40-560, gnl\|loxAfr1\|scaffold_62507 (2377-3479)
	40-560, gnl\|mm7\|chr5 (109922032-109921651)
	40-560, gnl\|mm7\|chr5 (109922769-109921665)
	40-560, gnl\|Mm7\|chr5 (109922195-109921660)
	40-560, gnl\|monDom2\|scaffold_54 (3902081-3901697)
	40-560, gnl\|monDom2\|scaffold_54 (4035381-4034280)
	40-560, gnl\|oryCun1\|scaffold_168196 (14290-13910)
	40-560, gnl\|oryCun1\|scaffold_168196 (15029-13924)
	40-560, gnl\|panTro1\|chr10 (134298993-134299375)
	40-560, gnl\|panTro1\|chr10 (134153370-134154475)
	40-560, gnl\|rheMac2\|chr11 (133428258-133428639)
	40-560, gnl\|rheMac2\|chr11 (133269223-133270324)
	40-560, gnl\|rn3\|chr12 (45913134-45913515)
	40-560, gnl\|rn3\|chr12 (45912397-45913501)
	40-560, gnl\|tetNig1\|chrUn_random (33513682-33514062)
	40-560, gnl\|tetNig1\|chrUn_random (33512998-33514060)
	40-560, gnl\|xenTro1\|scaffold_322 (1043435-1043813)
	40-560, gnl\|xenTro1\|scaffold_322 (954661-955759)