Non-Coding RNA Search

Thy1-THY010105D05

Sequence:


               
               GGTCGGAATCCTCAGCACTGTGGCCTACTGGAGTTAGAAAGGAAAAGGATGACTGTCTCC
CTCCAGCTACCAGTACAACCCACAGCCTCAGCTCCTAGTAGTTATTTAATTTTGTGTCTG
GTAACAGGGCTCAGAGACATTTCTGTGAAGCAGATGTGTGAAGGGCTGAGCCTTATGCAA
GCTCATTTCCTACAGAAACAAAGATATTCTGCAGCCTTAGAGGGGAAAGGGTTGTGACCT
TACTCGAAGATGCTTCCTTTTTGAATGCATTTGAGTAGCTTCACGGGTTGGTGTAGAACG
TCATCCAGTTTATCACCTTTTGCCACATTTCTTGTAAGCGATGAACAGAGAAAGAGGATG
AAGGAGAAAATAAAACGAACAGGGAAGCAGAAGAAGCAAAGGAGCAAGTAAAAAAAGACA
AAACCGGGAGTTCTTATTgtggctcagcaatcacgaacccaactagtatccaggaggaca
caggttcggtccctgaccttgctcagtgggttaaggatctggcattgctgtgagctggga
tataggtcgcaaatgtggctcanaatctgcgttgctgtggctgt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGGAATCCTCAGCACTGTGGCCTACTGGAGTTAGAAAGGAAAAGGATGACTGTCTCC
CTCCAGCTACCAGTACAACCCACAGCCTCAGCTCCTAGTAGTTATTTAATTTTGTGTCTG
GTAACAGGGCTCAGAGACATTTCTGTGAAGCAGATGTGTGAAGGGCTGAGCCTTATGCAA
GCTCATTTCCTACAGAAACAAAGATATTCTGCAGCCTTAGAGGGGAAAGGGTTGTGACCT
TACTCGAAGATGCTTCCTTTTTGAATGCATTTGAGTAGCTTCACGGGTTGGTGTAGAACG
TCATCCAGTTTATCACCTTTTGCCACATTTCTTGTAAGCGATGAACAGAGAAAGAGGATG
AAGGAGAAAATAAAACGAACAGGGAAGCAGAAGAAGCAAAGGAGCAAGTAAAAAAAGACA
AAACCGGGAGTTCTTATTgtggctcagcaatcacgaacccaactagtatccaggaggaca
caggttcggtccctgaccttgctcagtgggttaaggatctggcattgctgtgagctggga
tataggtcgcaaatgtggctcanaatctgcgttgctgtggctgt

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               111-230, - strand, RNAz p=0.851159

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-230, - strand, RNAz p=0.851159

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               34-230, gnl|bosTau2|chr19 (43490481-43490284)
               

               
               34-230, gnl|canFam2|chr9 (16203571-16203197)
               

               
               34-230, gnl|hg17|chr17 (62865829-62866168)
               

               
               34-230, gnl|Hg17|chr17 (62865960-62866152)
               

               
               34-230, gnl|loxAfr1|scaffold_3401 (53606-53917)
               

               
               34-230, gnl|mm7|chr11 (107527785-107527490)
               

               
               34-230, gnl|oryCun1|scaffold_177254 (49317-48993)
               

               
               34-230, gnl|panTro1|chr19 (66148182-66148521)
               

               
               34-230, gnl|rheMac2|chr16 (62780232-62780574)
               

               
               34-230, gnl|rn3|chr10 (96822939-96822642)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-230, gnl|bosTau2|chr19 (43490481-43490284)
               

               
               34-230, gnl|canFam2|chr9 (16203571-16203197)
               

               
               34-230, gnl|hg17|chr17 (62865829-62866168)
               

               
               34-230, gnl|Hg17|chr17 (62865960-62866152)
               

               
               34-230, gnl|loxAfr1|scaffold_3401 (53606-53917)
               

               
               34-230, gnl|mm7|chr11 (107527785-107527490)
               

               
               34-230, gnl|oryCun1|scaffold_177254 (49317-48993)
               

               
               34-230, gnl|panTro1|chr19 (66148182-66148521)
               

               
               34-230, gnl|rheMac2|chr16 (62780232-62780574)
               

               
               34-230, gnl|rn3|chr10 (96822939-96822642)

	34-230, gnl\|bosTau2\|chr19 (43490481-43490284)
	34-230, gnl\|canFam2\|chr9 (16203571-16203197)
	34-230, gnl\|hg17\|chr17 (62865829-62866168)
	34-230, gnl\|Hg17\|chr17 (62865960-62866152)
	34-230, gnl\|loxAfr1\|scaffold_3401 (53606-53917)
	34-230, gnl\|mm7\|chr11 (107527785-107527490)
	34-230, gnl\|oryCun1\|scaffold_177254 (49317-48993)
	34-230, gnl\|panTro1\|chr19 (66148182-66148521)
	34-230, gnl\|rheMac2\|chr16 (62780232-62780574)
	34-230, gnl\|rn3\|chr10 (96822939-96822642)