Non-Coding RNA Search

Thy1-THY010105G05

Sequence:


               
               ATCCAGCTCCAACTAAAGCAGCTAGGCCTCCTCCTGCCCTTAGCAGTGCCGTGTGGCAGG
TTGGAAGAGATGCCCCAAAGGTGGATGTAAACCCCACCCATCTCTTGAGTTTTCCTGCGT
CCTCCTGCTTCTCCCCCTCACCTACCCCCAACCCCCTGCTGCTCTGCTCTCTGCTGTCAC
CAATCTCTCTGACTCTAGACCTCAGAGGGCCAAGAAGAGAGAACAAAACCAAGAAAAGCA
GGACCAGCTCTCTAGAAATGAGGGTTTTAGGGGACAGGGAAGAAATGGCTGAAGCTCTGG
GGCCAGACTAGAGAGTTAGAAGCAGGGTAGCTGCTTTAGGGGAGCCAGGGAGCCAAAATA
AATTCATGCCTAAAAGTACAATCACCGTGTAGGTCCAGGCCCTGATTGCCACTTGTGGCC
ACAAGAACTTGGCCCTGGGACTGGGAAGCAGTGTCTTTCGTGGGATTTTAAAACTTTGCT
TCTTTCTTTCCTCTAGGAACTATCCTCTCCCCTCCCCCCACTCCCTACCTATCTCCCATC
TGAGAGAAAACCAGCGGAATGATCAAGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAGCTCCAACTAAAGCAGCTAGGCCTCCTCCTGCCCTTAGCAGTGCCGTGTGGCAGG
TTGGAAGAGATGCCCCAAAGGTGGATGTAAACCCCACCCATCTCTTGAGTTTTCCTGCGT
CCTCCTGCTTCTCCCCCTCACCTACCCCCAACCCCCTGCTGCTCTGCTCTCTGCTGTCAC
CAATCTCTCTGACTCTAGACCTCAGAGGGCCAAGAAGAGAGAACAAAACCAAGAAAAGCA
GGACCAGCTCTCTAGAAATGAGGGTTTTAGGGGACAGGGAAGAAATGGCTGAAGCTCTGG
GGCCAGACTAGAGAGTTAGAAGCAGGGTAGCTGCTTTAGGGGAGCCAGGGAGCCAAAATA
AATTCATGCCTAAAAGTACAATCACCGTGTAGGTCCAGGCCCTGATTGCCACTTGTGGCC
ACAAGAACTTGGCCCTGGGACTGGGAAGCAGTGTCTTTCGTGGGATTTTAAAACTTTGCT
TCTTTCTTTCCTCTAGGAACTATCCTCTCCCCTCCCCCCACTCCCTACCTATCTCCCATC
TGAGAGAAAACCAGCGGAATGATCAAGAAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               258-378, - strand, RNAz p=0.988095
               

               
               462-571, - strand, RNAz p=0.968933

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-378, - strand, RNAz p=0.988095
               

               
               462-571, - strand, RNAz p=0.968933

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-378, gnl|bosTau2|chr2 (77234926-77234560)
               

               
               9-378, gnl|Hg17|chr1 (29263107-29263782)
               

               
               9-378, gnl|Mm7|chr4 (131140770-131140452)
               


               
               396-571, gnl|bosTau2|chr2 (77234496-77234315)
               

               
               396-571, gnl|Hg17|chr1 (29263847-29264011)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-378, gnl|bosTau2|chr2 (77234926-77234560)
               

               
               9-378, gnl|Hg17|chr1 (29263107-29263782)
               

               
               9-378, gnl|Mm7|chr4 (131140770-131140452)
               


               
               396-571, gnl|bosTau2|chr2 (77234496-77234315)
               

               
               396-571, gnl|Hg17|chr1 (29263847-29264011)

	258-378, - strand, RNAz p=0.988095
	462-571, - strand, RNAz p=0.968933

	9-378, gnl\|bosTau2\|chr2 (77234926-77234560)
	9-378, gnl\|Hg17\|chr1 (29263107-29263782)
	9-378, gnl\|Mm7\|chr4 (131140770-131140452)

	396-571, gnl\|bosTau2\|chr2 (77234496-77234315)
	396-571, gnl\|Hg17\|chr1 (29263847-29264011)