Non-Coding RNA Search

Thy1-THY010106C10

Sequence:


               
               TGGGATCCTGCATGGGTGTAGCGGGAGCAGTCAGTCTGCCCCTCCCTCCCCCTCTGCCCT
ANTGCCCCTCCCCCACGGGCTGGCCTGGTCACCTAGTCACCGCGCCAGGCACCTGCTGAC
CTCGAATGCCCCCTCCCTGGCTGACGGTCATTCTGGAGCTGGGCACTCTGGGTGGCATAA
GGCCCCGTCGGGGGAGGAAAACCTCTCTGCACAGAGGGCCCTGCTTCTTCCTGCAGGGCC
TCTGTAGCCCTTTGCCCTCTACCCACAGGTTCAGGCCGAGCCTGGCCCCAGGCGGGCTCC
CCATCAGCCCGAGGCAGCCTCAGGGCCAGAGCCTCCTCTTGCCACCCTTCATCAGATTTA
CAAACTCAGAGCAGGAGGTGTGACTTGGGCCTGGCTTCACACTGCACAGGGGGTGGGGAG
GAGCCGGTGTCCAAGGTGTGGACACTGACCGGGGATTGCTCCCCACCTCCTAGCTATCCA
AGAGTCAGTCAGCAAACACATATTAACCCCTAGCTGTGTGTTCACAGCTACCCCGTGCTT
TGTGGGAGGGCGAAACTGAGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATCCTGCATGGGTGTAGCGGGAGCAGTCAGTCTGCCCCTCCCTCCCCCTCTGCCCT
ANTGCCCCTCCCCCACGGGCTGGCCTGGTCACCTAGTCACCGCGCCAGGCACCTGCTGAC
CTCGAATGCCCCCTCCCTGGCTGACGGTCATTCTGGAGCTGGGCACTCTGGGTGGCATAA
GGCCCCGTCGGGGGAGGAAAACCTCTCTGCACAGAGGGCCCTGCTTCTTCCTGCAGGGCC
TCTGTAGCCCTTTGCCCTCTACCCACAGGTTCAGGCCGAGCCTGGCCCCAGGCGGGCTCC
CCATCAGCCCGAGGCAGCCTCAGGGCCAGAGCCTCCTCTTGCCACCCTTCATCAGATTTA
CAAACTCAGAGCAGGAGGTGTGACTTGGGCCTGGCTTCACACTGCACAGGGGGTGGGGAG
GAGCCGGTGTCCAAGGTGTGGACACTGACCGGGGATTGCTCCCCACCTCCTAGCTATCCA
AGAGTCAGTCAGCAAACACATATTAACCCCTAGCTGTGTGTTCACAGCTACCCCGTGCTT
TGTGGGAGGGCGAAACTGAGCCAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               106-195, - strand, RNAz p=0.517631
               

               
               343-533, - strand, RNAz p=0.978652

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-195, - strand, RNAz p=0.517631
               

               
               343-533, - strand, RNAz p=0.978652

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               441-729, - strand, RNAmicro p=0.99987
               

               
               276-398, - strand, RNAmicro p=0.953726

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               441-729, - strand, RNAmicro p=0.99987
               

               
               276-398, - strand, RNAmicro p=0.953726

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               106-533, gnl|bosTau2|chr2 (73861008-73861440)
               

               
               106-533, gnl|Hg17|chr2 (232361269-232360618)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-533, gnl|bosTau2|chr2 (73861008-73861440)
               

               
               106-533, gnl|Hg17|chr2 (232361269-232360618)

	106-195, - strand, RNAz p=0.517631
	343-533, - strand, RNAz p=0.978652

	441-729, - strand, RNAmicro p=0.99987
	276-398, - strand, RNAmicro p=0.953726

	106-533, gnl\|bosTau2\|chr2 (73861008-73861440)
	106-533, gnl\|Hg17\|chr2 (232361269-232360618)