Non-Coding RNA Search

Thy1-THY010116D09

Sequence:


               
               CTGTGGGCATGTCCCTAACTCCCTGTTCCTCCACACTTTTCTGAAAATTGGATGAAAATA
GTACCTCCCTTCCTCAAATGATACTCTGAGGATGAATGCGATGGTGCATCTAGCATAGGG
CTGGCTCAAAGTAAGACTTCAGGGACTGTCAGCTATGATGATGATTATGTAATTATTCCC
ATTTAACAGGAAGGACAGTCTAGACCAGGGAGGTCAAGTGACTTACTTGAGGTCATGTGG
AGAGTTAGAGGCAAAGCCAGAAATAGGAACCATGGCTCATGGAATCCCAGGCCAGTGTTC
TCTCCCCAGGATTCTTGTTGGTCTCCAGGAAAAAAAGTTAAGTATACAGAAACAGTTCTG
AGTCTAATCCTTTGGCAGCTGGTCCTGGCAATGGCAGAGGCTTGGAGATTAGGGCTTCCT
CAGCACACAGGACCCTCAGTCCAGGGCCTTAAGAGTCCTCAGGGAGGGACACTTGTGGTA
GCAGAAGCAGGGAACTTCCTTCCTTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGGCATGTCCCTAACTCCCTGTTCCTCCACACTTTTCTGAAAATTGGATGAAAATA
GTACCTCCCTTCCTCAAATGATACTCTGAGGATGAATGCGATGGTGCATCTAGCATAGGG
CTGGCTCAAAGTAAGACTTCAGGGACTGTCAGCTATGATGATGATTATGTAATTATTCCC
ATTTAACAGGAAGGACAGTCTAGACCAGGGAGGTCAAGTGACTTACTTGAGGTCATGTGG
AGAGTTAGAGGCAAAGCCAGAAATAGGAACCATGGCTCATGGAATCCCAGGCCAGTGTTC
TCTCCCCAGGATTCTTGTTGGTCTCCAGGAAAAAAAGTTAAGTATACAGAAACAGTTCTG
AGTCTAATCCTTTGGCAGCTGGTCCTGGCAATGGCAGAGGCTTGGAGATTAGGGCTTCCT
CAGCACACAGGACCCTCAGTCCAGGGCCTTAAGAGTCCTCAGGGAGGGACACTTGTGGTA
GCAGAAGCAGGGAACTTCCTTCCTTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               303-414, + strand, RNAz p=0.688774

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-414, + strand, RNAz p=0.688774

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-161, gnl|bosTau2|chr7 (21013878-21014038)
               

               
               1-161, gnl|Hg17|chr5 (131788117-131788279)
               


               
               194-501, gnl|bosTau2|chr7 (21014037-21014343)
               

               
               194-501, gnl|canFam2|chr11 (23721171-23721548)
               

               
               194-501, gnl|hg17|chr5 (131788157-131788516)
               

               
               194-501, gnl|Hg17|chr5 (131788278-131788613)
               

               
               194-501, gnl|loxAfr1|scaffold_127893 (1311-962)
               

               
               194-501, gnl|mm7|chr11 (53799670-53799487)
               

               
               194-501, gnl|panTro1|chr4 (138121146-138121504)
               

               
               194-501, gnl|rn3|chr10 (39296688-39296369)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr7 (21013878-21014038)
               

               
               1-161, gnl|Hg17|chr5 (131788117-131788279)
               


               
               194-501, gnl|bosTau2|chr7 (21014037-21014343)
               

               
               194-501, gnl|canFam2|chr11 (23721171-23721548)
               

               
               194-501, gnl|hg17|chr5 (131788157-131788516)
               

               
               194-501, gnl|Hg17|chr5 (131788278-131788613)
               

               
               194-501, gnl|loxAfr1|scaffold_127893 (1311-962)
               

               
               194-501, gnl|mm7|chr11 (53799670-53799487)
               

               
               194-501, gnl|panTro1|chr4 (138121146-138121504)
               

               
               194-501, gnl|rn3|chr10 (39296688-39296369)

	1-161, gnl\|bosTau2\|chr7 (21013878-21014038)
	1-161, gnl\|Hg17\|chr5 (131788117-131788279)

	194-501, gnl\|bosTau2\|chr7 (21014037-21014343)
	194-501, gnl\|canFam2\|chr11 (23721171-23721548)
	194-501, gnl\|hg17\|chr5 (131788157-131788516)
	194-501, gnl\|Hg17\|chr5 (131788278-131788613)
	194-501, gnl\|loxAfr1\|scaffold_127893 (1311-962)
	194-501, gnl\|mm7\|chr11 (53799670-53799487)
	194-501, gnl\|panTro1\|chr4 (138121146-138121504)
	194-501, gnl\|rn3\|chr10 (39296688-39296369)