Non-Coding RNA Search

Thy1-THY010120A11

Sequence:


               
               TTTGTTCTCTAACTCAAGTGTTAAGTGTGTATTATGAAACCTCAAAGCCAATTTCGGTGA
TTGCAATGTGCAAATATTTTTTAAATTATGTAATTAAATAGGACTTGGCCTGCGAGGTCC
TCCCAAGTAATTTATTAATTGAATAGTCTGATTTAATTGTATGTTATTTTCCTTTATTCA
GGGAAGGGCCTGCATCTCTTGCAGAAATGGGAGCCTCTTGTGTGCCTGTCACTGGAGGTG
CAGAGGTCTCTCCAAGAAATCTTTAGCACCCAATTAAATATTAACCAAGAAGAGGGGACG
TGTTCCTTCTGTCCTCGAAACTCTGTTTTGATGTCGGAGTCTGGTGTTTTTAAAGGGAAA
AAAAATCCTGTGGGGTCAAATTATTTATAATTTACTCGGTTTATCGTGACATTATTGAAA
AGTGAATCACCCTTTTCCTCTTAATTGTGCAGGGTTATATAAAGGAAGCGTGATAAAGAG
AGAAGCCCCTTGAGCTCAGCGTTAGCTTTATCCAGCTATGGCTATAGCCATGCTGTATCT
GTTTCCTTAAAATGTCATTTTAAAGGTATTGTGGTNTTAGAGCAGCAGCTGTGATGAAAA
GTATGTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTCTCTAACTCAAGTGTTAAGTGTGTATTATGAAACCTCAAAGCCAATTTCGGTGA
TTGCAATGTGCAAATATTTTTTAAATTATGTAATTAAATAGGACTTGGCCTGCGAGGTCC
TCCCAAGTAATTTATTAATTGAATAGTCTGATTTAATTGTATGTTATTTTCCTTTATTCA
GGGAAGGGCCTGCATCTCTTGCAGAAATGGGAGCCTCTTGTGTGCCTGTCACTGGAGGTG
CAGAGGTCTCTCCAAGAAATCTTTAGCACCCAATTAAATATTAACCAAGAAGAGGGGACG
TGTTCCTTCTGTCCTCGAAACTCTGTTTTGATGTCGGAGTCTGGTGTTTTTAAAGGGAAA
AAAAATCCTGTGGGGTCAAATTATTTATAATTTACTCGGTTTATCGTGACATTATTGAAA
AGTGAATCACCCTTTTCCTCTTAATTGTGCAGGGTTATATAAAGGAAGCGTGATAAAGAG
AGAAGCCCCTTGAGCTCAGCGTTAGCTTTATCCAGCTATGGCTATAGCCATGCTGTATCT
GTTTCCTTAAAATGTCATTTTAAAGGTATTGTGGTNTTAGAGCAGCAGCTGTGATGAAAA
GTATGTAAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               490-609, - strand, RNAz p=0.989358
               

               
               492-609, + strand, RNAz p=0.579805

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               490-609, - strand, RNAz p=0.989358
               

               
               492-609, + strand, RNAz p=0.579805

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-609, gnl|bosTau2|chr22 (24439373-24440002)
               

               
               1-609, gnl|canFam2|chr20 (23684233-23683714)
               

               
               1-609, gnl|echTel1|scaffold_317135 (220711-220174)
               

               
               1-609, gnl|galGal2|chr12 (16046343-16046841)
               

               
               1-609, gnl|hg17|chr3 (71449639-71450155)
               

               
               1-609, gnl|Hg17|chr3 (71450379-71449749)
               

               
               1-609, gnl|loxAfr1|scaffold_19214 (775-263)
               

               
               1-609, gnl|mm7|chr6 (99363434-99363944)
               

               
               1-609, gnl|Mm7|chr6 (99364166-99363541)
               

               
               1-609, gnl|monDom2|scaffold_5 (19025017-19025529)
               

               
               1-609, gnl|oryCun1|scaffold_213555 (357590-358120)
               

               
               1-609, gnl|panTro1|chr2 (73391515-73392031)
               

               
               1-609, gnl|rheMac2|chr2 (64896822-64896306)
               

               
               1-609, gnl|rn3|chr4 (134363887-134364410)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-609, gnl|bosTau2|chr22 (24439373-24440002)
               

               
               1-609, gnl|canFam2|chr20 (23684233-23683714)
               

               
               1-609, gnl|echTel1|scaffold_317135 (220711-220174)
               

               
               1-609, gnl|galGal2|chr12 (16046343-16046841)
               

               
               1-609, gnl|hg17|chr3 (71449639-71450155)
               

               
               1-609, gnl|Hg17|chr3 (71450379-71449749)
               

               
               1-609, gnl|loxAfr1|scaffold_19214 (775-263)
               

               
               1-609, gnl|mm7|chr6 (99363434-99363944)
               

               
               1-609, gnl|Mm7|chr6 (99364166-99363541)
               

               
               1-609, gnl|monDom2|scaffold_5 (19025017-19025529)
               

               
               1-609, gnl|oryCun1|scaffold_213555 (357590-358120)
               

               
               1-609, gnl|panTro1|chr2 (73391515-73392031)
               

               
               1-609, gnl|rheMac2|chr2 (64896822-64896306)
               

               
               1-609, gnl|rn3|chr4 (134363887-134364410)

	490-609, - strand, RNAz p=0.989358
	492-609, + strand, RNAz p=0.579805

	1-609, gnl\|bosTau2\|chr22 (24439373-24440002)
	1-609, gnl\|canFam2\|chr20 (23684233-23683714)
	1-609, gnl\|echTel1\|scaffold_317135 (220711-220174)
	1-609, gnl\|galGal2\|chr12 (16046343-16046841)
	1-609, gnl\|hg17\|chr3 (71449639-71450155)
	1-609, gnl\|Hg17\|chr3 (71450379-71449749)
	1-609, gnl\|loxAfr1\|scaffold_19214 (775-263)
	1-609, gnl\|mm7\|chr6 (99363434-99363944)
	1-609, gnl\|Mm7\|chr6 (99364166-99363541)
	1-609, gnl\|monDom2\|scaffold_5 (19025017-19025529)
	1-609, gnl\|oryCun1\|scaffold_213555 (357590-358120)
	1-609, gnl\|panTro1\|chr2 (73391515-73392031)
	1-609, gnl\|rheMac2\|chr2 (64896822-64896306)
	1-609, gnl\|rn3\|chr4 (134363887-134364410)