Non-Coding RNA Search

Thy1-THY010201A12

Sequence:


               
               AATATAAAATCATAATCAGATATTTTAGTTAGAATCATAATCTAAGCTATTGCTAGGATA
AATTATCTAAAACATTACAAGTACATAAAAATCAAATATGCACAGACTCTATAATGCAAA
AAAAAAAAAAAGAACTAATTTTACCTAGATGCAGCCCCTAGGGAACTGGGACTGAGTTTC
AATCCCTGTGCCAGAACAAGAGGCATGGATTCAGATTGTTCATGATGAGGAGCTGCATGC
CAAGACCTCAGCGCACGCCAGGATGCACAAAAGGTAGCTTAGTCCAAAAACAAGAATAGT
AAAAAATATCACCAACTGACATGGAGAAGTTCTACTGAAGCTTGCCATCTGCCTGGGAGT
TGTTCTGGGTAGAAAAACAAAATTAATGGGTTCCTCAAGCCAGTACTGCTTGCTTGTGGG
GTCCAAATTTATAGCAAACATCACATGGTGTAGGAATCCCAAGCCAAGGGTTCCCATAAA
AATGGCCAATGTCTGGGGACCCAGAGAAGCAAACATGAAACTACACTGCGAAAGACTGCC
CACAAAGGATCCTTGTTATGGAAATTGTCCCCCACCATAAACAACTAGAATACCAGGCAC
AGTATATATGGGAATAAAAAACTGTTTAAGGCATTGGCTCTCGTAGACCTGCAGGGCTGT
GATCCCCCAGAAAAATGGAAACAGTAATGAGAGCCCCCCAACTTGTTTTCTGGACAGTGC
TCAGGCTACAGTCAGGCCAGAGGGACGCAGACAGGGCCGCTCAGTCTCACTGAGTTGGGG
GGATAGAGACTAAAATTCAAGGAGGCTGACGTGGCTGCTTTGGGACAGATACAGGTCTGC
CAGGATAACGCACCATCCCTTTATCCCTCTAGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATAAAATCATAATCAGATATTTTAGTTAGAATCATAATCTAAGCTATTGCTAGGATA
AATTATCTAAAACATTACAAGTACATAAAAATCAAATATGCACAGACTCTATAATGCAAA
AAAAAAAAAAAGAACTAATTTTACCTAGATGCAGCCCCTAGGGAACTGGGACTGAGTTTC
AATCCCTGTGCCAGAACAAGAGGCATGGATTCAGATTGTTCATGATGAGGAGCTGCATGC
CAAGACCTCAGCGCACGCCAGGATGCACAAAAGGTAGCTTAGTCCAAAAACAAGAATAGT
AAAAAATATCACCAACTGACATGGAGAAGTTCTACTGAAGCTTGCCATCTGCCTGGGAGT
TGTTCTGGGTAGAAAAACAAAATTAATGGGTTCCTCAAGCCAGTACTGCTTGCTTGTGGG
GTCCAAATTTATAGCAAACATCACATGGTGTAGGAATCCCAAGCCAAGGGTTCCCATAAA
AATGGCCAATGTCTGGGGACCCAGAGAAGCAAACATGAAACTACACTGCGAAAGACTGCC
CACAAAGGATCCTTGTTATGGAAATTGTCCCCCACCATAAACAACTAGAATACCAGGCAC
AGTATATATGGGAATAAAAAACTGTTTAAGGCATTGGCTCTCGTAGACCTGCAGGGCTGT
GATCCCCCAGAAAAATGGAAACAGTAATGAGAGCCCCCCAACTTGTTTTCTGGACAGTGC
TCAGGCTACAGTCAGGCCAGAGGGACGCAGACAGGGCCGCTCAGTCTCACTGAGTTGGGG
GGATAGAGACTAAAATTCAAGGAGGCTGACGTGGCTGCTTTGGGACAGATACAGGTCTGC
CAGGATAACGCACCATCCCTTTATCCCTCTAGTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               709-817, + strand, RNAz p=0.99827

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               709-817, + strand, RNAz p=0.99827

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-163, gnl|bosTau2|chr24 (26904464-26904620)
               

               
               1-163, gnl|Hg17|chr18 (3054204-3053723)
               

               
               1-163, gnl|Mm7|chr17 (69408335-69408940)
               


               
               288-817, gnl|bosTau2|chr24 (26904745-26905285)
               

               
               288-817, gnl|Hg17|chr18 (3053620-3053088)
               

               
               288-817, gnl|Mm7|chr17 (69409032-69409510)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-163, gnl|bosTau2|chr24 (26904464-26904620)
               

               
               1-163, gnl|Hg17|chr18 (3054204-3053723)
               

               
               1-163, gnl|Mm7|chr17 (69408335-69408940)
               


               
               288-817, gnl|bosTau2|chr24 (26904745-26905285)
               

               
               288-817, gnl|Hg17|chr18 (3053620-3053088)
               

               
               288-817, gnl|Mm7|chr17 (69409032-69409510)

	1-163, gnl\|bosTau2\|chr24 (26904464-26904620)
	1-163, gnl\|Hg17\|chr18 (3054204-3053723)
	1-163, gnl\|Mm7\|chr17 (69408335-69408940)

	288-817, gnl\|bosTau2\|chr24 (26904745-26905285)
	288-817, gnl\|Hg17\|chr18 (3053620-3053088)
	288-817, gnl\|Mm7\|chr17 (69409032-69409510)