Non-Coding RNA Search

Thy1-THY010206E05

Sequence:


               
               AGTTCCCTCAGGCTGTTGGCAGAGAGATTCCGAAATGGCGGTGCAGCCGAAGGAGACACT
GCAGCTGGAGAGCGCAGCCGAGATCGGCTTCGTGCGCTTCTTCCAGGGCATGCCTGAGAA
GCCGACCACCACGGTGCGCCTTTTCGACCGGGGCGACTTCTACACCGCGCACGGCGAGGA
CGCACTCCTAGCTGCCCGGGAGGTGTTCAAGACCCAGGGGGTGGTCAAGTTCATGGGGCC
GGCAGGAGCAAAGACTCTGGAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGT
AAAAGATCTTCTTCTAGTTCGTCAATACAGAGTTGAAGTTTATAAGAATAGAGCTGGAAA
TAAGGCCTCCAAGGAGCATGACTGGTATTTGGCATTTAAGGCTTCGCCAGGTAATCTTTC
TCAATTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTCCCATCGGTGTCGTGGG
TGTTAAGATGTCTACAGTTGATGGCCAGAGACAGGTTGGAGTTGGATATGTTGACTCCAT
ACAGCGGAAGCTAGGACTGTGTGAGTTTCCTGATAATGATCAGCTCTCCAATCTGGAGGC
TCTCCTGATTCAGATTGGACCGAAGGAATGTGTTTTACCAGGAGGAGATACTGCTGGAGA
CATGGGAAAACTGAGGCAGGTTATTCAGAGAGGAGGAATTCTAATCACAGAAAGAAAAAG
AGCTGACTTTTCTACCAAAGATATTTATCAGGACCTCAACCGGCTGTTGAAAGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCCTCAGGCTGTTGGCAGAGAGATTCCGAAATGGCGGTGCAGCCGAAGGAGACACT
GCAGCTGGAGAGCGCAGCCGAGATCGGCTTCGTGCGCTTCTTCCAGGGCATGCCTGAGAA
GCCGACCACCACGGTGCGCCTTTTCGACCGGGGCGACTTCTACACCGCGCACGGCGAGGA
CGCACTCCTAGCTGCCCGGGAGGTGTTCAAGACCCAGGGGGTGGTCAAGTTCATGGGGCC
GGCAGGAGCAAAGACTCTGGAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGT
AAAAGATCTTCTTCTAGTTCGTCAATACAGAGTTGAAGTTTATAAGAATAGAGCTGGAAA
TAAGGCCTCCAAGGAGCATGACTGGTATTTGGCATTTAAGGCTTCGCCAGGTAATCTTTC
TCAATTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTCCCATCGGTGTCGTGGG
TGTTAAGATGTCTACAGTTGATGGCCAGAGACAGGTTGGAGTTGGATATGTTGACTCCAT
ACAGCGGAAGCTAGGACTGTGTGAGTTTCCTGATAATGATCAGCTCTCCAATCTGGAGGC
TCTCCTGATTCAGATTGGACCGAAGGAATGTGTTTTACCAGGAGGAGATACTGCTGGAGA
CATGGGAAAACTGAGGCAGGTTATTCAGAGAGGAGGAATTCTAATCACAGAAAGAAAAAG
AGCTGACTTTTCTACCAAAGATATTTATCAGGACCTCAACCGGCTGTTGAAAGGGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33622358|gb|AAQ23475.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33622358|gb|AAQ23475.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               438-681, + strand, RNAz p=0.816301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-681, + strand, RNAz p=0.816301

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-246, gnl|bosTau2|chr11 (19529695-19529450)
               

               
               1-246, gnl|Hg17|chr2 (47541948-47542193)
               

               
               1-246, gnl|Mm7|chr17 (85975002-85975249)
               


               
               399-681, gnl|bosTau2|chr11 (19519140-19518858)
               

               
               399-681, gnl|Hg17|chr2 (47548882-47549164)
               

               
               399-681, gnl|Mm7|chr17 (85982240-85982522)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr11 (19529695-19529450)
               

               
               1-246, gnl|Hg17|chr2 (47541948-47542193)
               

               
               1-246, gnl|Mm7|chr17 (85975002-85975249)
               


               
               399-681, gnl|bosTau2|chr11 (19519140-19518858)
               

               
               399-681, gnl|Hg17|chr2 (47548882-47549164)
               

               
               399-681, gnl|Mm7|chr17 (85982240-85982522)

	1-246, gnl\|bosTau2\|chr11 (19529695-19529450)
	1-246, gnl\|Hg17\|chr2 (47541948-47542193)
	1-246, gnl\|Mm7\|chr17 (85975002-85975249)

	399-681, gnl\|bosTau2\|chr11 (19519140-19518858)
	399-681, gnl\|Hg17\|chr2 (47548882-47549164)
	399-681, gnl\|Mm7\|chr17 (85982240-85982522)