Non-Coding RNA Search

Thy1-THY010206F09

Sequence:


               
               GGGAGTGTGAAGAGGATTTATGCACTTGGTACTTGAAGTTTGTGAGGTACAGAGTAATTC
TGAGGCTGTTGTTACCTGTGTAACAGCACCTAGGGTCTTAGTGCCTTTTCACGCTCACCA
AGCTGAAGCAGTTTCCTCCTGACCAGTTGAAACTAGATTCAGGCTAGTCTCACATGAATT
GAAAGTCTCCTGAACTAGCCCTTTGCAGACTTGCCCTTTTAGAATAATCCTAATTTAGAT
TTATCCCCTCTGACCCGAAATGGGAAGATGAAATAGTTTCTCTTGTTAACACATACCAAT
TTTAAAAAGAGTGTGGAATCTTTAAGCCCACAAATTATCCTAGGTCTTTCTCAGTCTGAT
TGGTTTTATAACATTATAACCTGAGATGGGAATAGGTATGTAACATGTATTTACCCTAAA
CCGGATGTATTCGAGTTTTTACCACCTTCCTAGTGTCTGGGGTTTTGCGTTGCTGGGCAG
TGACACAGCAAATGATCATTGGAACTCAATTCTTGACCTTTTGTTTGTGTATGTGTTTTG
TTGGTTACAAAATTTGGAAATGGCAGGCAGTTTTGTTTGAGCTTTCCCCACATCTTGGTG
TTAGAACTTTAATCTCAGATCTTACCTTAATACTGAGCTCCACCTTTTCATAACAGATAG
GAGGTCAGATCCTTGGCCCAAGAGAGAAGGTGAAGGTTGCCAGAGTTTGTGGATGGGGTG
TGGAAAGTTCATGGCTATTGTAATTGTTCTTTCCGCCATGTACCCATTTTCCACATAGGG
GCAATTGATTCAGTTGCGTCTTTTTTAAGATTACTTAATCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTGTGAAGAGGATTTATGCACTTGGTACTTGAAGTTTGTGAGGTACAGAGTAATTC
TGAGGCTGTTGTTACCTGTGTAACAGCACCTAGGGTCTTAGTGCCTTTTCACGCTCACCA
AGCTGAAGCAGTTTCCTCCTGACCAGTTGAAACTAGATTCAGGCTAGTCTCACATGAATT
GAAAGTCTCCTGAACTAGCCCTTTGCAGACTTGCCCTTTTAGAATAATCCTAATTTAGAT
TTATCCCCTCTGACCCGAAATGGGAAGATGAAATAGTTTCTCTTGTTAACACATACCAAT
TTTAAAAAGAGTGTGGAATCTTTAAGCCCACAAATTATCCTAGGTCTTTCTCAGTCTGAT
TGGTTTTATAACATTATAACCTGAGATGGGAATAGGTATGTAACATGTATTTACCCTAAA
CCGGATGTATTCGAGTTTTTACCACCTTCCTAGTGTCTGGGGTTTTGCGTTGCTGGGCAG
TGACACAGCAAATGATCATTGGAACTCAATTCTTGACCTTTTGTTTGTGTATGTGTTTTG
TTGGTTACAAAATTTGGAAATGGCAGGCAGTTTTGTTTGAGCTTTCCCCACATCTTGGTG
TTAGAACTTTAATCTCAGATCTTACCTTAATACTGAGCTCCACCTTTTCATAACAGATAG
GAGGTCAGATCCTTGGCCCAAGAGAGAAGGTGAAGGTTGCCAGAGTTTGTGGATGGGGTG
TGGAAAGTTCATGGCTATTGTAATTGTTCTTTCCGCCATGTACCCATTTTCCACATAGGG
GCAATTGATTCAGTTGCGTCTTTTTTAAGATTACTTAATCTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               137-256, - strand, RNAz p=0.983461
               

               
               645-761, - strand, RNAz p=0.753305

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-256, - strand, RNAz p=0.983461
               

               
               645-761, - strand, RNAz p=0.753305

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               2-566, gnl|bosTau2|chr19 (17101822-17101280)
               

               
               2-566, gnl|Hg17|chr17 (1304904-1303398)
               


               
               568-823, gnl|bosTau2|chr19 (17101069-17100809)
               

               
               568-823, gnl|Hg17|chr17 (1303385-1302485)
               

               
               568-823, gnl|Mm7|chr11 (75763200-75763610)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-566, gnl|bosTau2|chr19 (17101822-17101280)
               

               
               2-566, gnl|Hg17|chr17 (1304904-1303398)
               


               
               568-823, gnl|bosTau2|chr19 (17101069-17100809)
               

               
               568-823, gnl|Hg17|chr17 (1303385-1302485)
               

               
               568-823, gnl|Mm7|chr11 (75763200-75763610)

	137-256, - strand, RNAz p=0.983461
	645-761, - strand, RNAz p=0.753305

	2-566, gnl\|bosTau2\|chr19 (17101822-17101280)
	2-566, gnl\|Hg17\|chr17 (1304904-1303398)

	568-823, gnl\|bosTau2\|chr19 (17101069-17100809)
	568-823, gnl\|Hg17\|chr17 (1303385-1302485)
	568-823, gnl\|Mm7\|chr11 (75763200-75763610)