Non-Coding RNA Search

Thy1-THY010207A05

Sequence:


               
               CGAGTCGGCCTTGTCCTACTGGATGACTCCCAGAAGAATTCCGTGGATAAAGTAACACAC
AGTGCATATAGAGGAAGACCAGACTGGTGATAAAGAAGTCCCAACTAAGAAAATATCCCA
GAATGTTGAGTAAAACATCAGGAGAGAAAGTTCGTGGATGGATCCAGGAGGTTTTATATT
CATCAAATAGGAAATCCGAAGCAGAGATGACAGACAATGGCAGAGGAAGAAGAAGAAGGG
GTAGAAAAAAATCAAAGACGTAGCAAAAGAAAATTCCCCTGAGCTTGAAAAAACATGCAC
AGCTTTAGAATGGAAAAATTACACTGAATTCAGGACAGGAAATAGTGAAAAGGAACATTC
GGATAGTCAATCTTGTTGAAATTTCAGAACATCAGGGATATAAAACAAAAAGCTTCCAGA
TAGAATCAAACTTACATGAGAATTTCTCATCAGCATGGAAGATGCCCAAGGATGGTGAAC
CAGTGCCTTCAGAATTCTGGAGGAGGACGATTTGGAACTAATAACTCTACCTCCTCCTAC
CTTGAAAGCGGCATAAAGGCTTTTGATGTGTAAGAGTTTGGAAAATGGATTTACTCCGTG
ATCCATGTCTCCGGAAGAAAAAAACTCTGGAGTTATTTCTGTCAACCAAAAAAGATAATA
AATAACATGCGAATCAAGAAATGAAGGGAGCCATAAATACAGTGTGGGAAGATTGATTTG
TTCATAACTTGGGGAAGATCCCTCTTCTTGGGACGGAGTTGGAGCCTTGTGGAATTACAT
TTCTTTCCCTTGGGTGCAGTTCGCACTGAGCTGTTCCTCAGGAAGTGATCCCGTTACAAT
CGTATTGTTACATTCGCTTCCTCTTTTAGAATAACCTGTATAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTCGGCCTTGTCCTACTGGATGACTCCCAGAAGAATTCCGTGGATAAAGTAACACAC
AGTGCATATAGAGGAAGACCAGACTGGTGATAAAGAAGTCCCAACTAAGAAAATATCCCA
GAATGTTGAGTAAAACATCAGGAGAGAAAGTTCGTGGATGGATCCAGGAGGTTTTATATT
CATCAAATAGGAAATCCGAAGCAGAGATGACAGACAATGGCAGAGGAAGAAGAAGAAGGG
GTAGAAAAAAATCAAAGACGTAGCAAAAGAAAATTCCCCTGAGCTTGAAAAAACATGCAC
AGCTTTAGAATGGAAAAATTACACTGAATTCAGGACAGGAAATAGTGAAAAGGAACATTC
GGATAGTCAATCTTGTTGAAATTTCAGAACATCAGGGATATAAAACAAAAAGCTTCCAGA
TAGAATCAAACTTACATGAGAATTTCTCATCAGCATGGAAGATGCCCAAGGATGGTGAAC
CAGTGCCTTCAGAATTCTGGAGGAGGACGATTTGGAACTAATAACTCTACCTCCTCCTAC
CTTGAAAGCGGCATAAAGGCTTTTGATGTGTAAGAGTTTGGAAAATGGATTTACTCCGTG
ATCCATGTCTCCGGAAGAAAAAAACTCTGGAGTTATTTCTGTCAACCAAAAAAGATAATA
AATAACATGCGAATCAAGAAATGAAGGGAGCCATAAATACAGTGTGGGAAGATTGATTTG
TTCATAACTTGGGGAAGATCCCTCTTCTTGGGACGGAGTTGGAGCCTTGTGGAATTACAT
TTCTTTCCCTTGGGTGCAGTTCGCACTGAGCTGTTCCTCAGGAAGTGATCCCGTTACAAT
CGTATTGTTACATTCGCTTCCTCTTTTAGAATAACCTGTATAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               402-515, - strand, RNAz p=0.829575
               

               
               703-822, - strand, RNAz p=0.53418

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-515, - strand, RNAz p=0.829575
               

               
               703-822, - strand, RNAz p=0.53418

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               630-734, - strand, RNAmicro p=0.999761
               

               
               611-720, + strand, RNAmicro p=0.975218

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               630-734, - strand, RNAmicro p=0.999761
               

               
               611-720, + strand, RNAmicro p=0.975218

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               65-879, gnl|bosTau2|chr3 (72381257-72380441)
               

               
               65-879, gnl|Hg17|chr1 (41742107-41741226)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-879, gnl|bosTau2|chr3 (72381257-72380441)
               

               
               65-879, gnl|Hg17|chr1 (41742107-41741226)

	402-515, - strand, RNAz p=0.829575
	703-822, - strand, RNAz p=0.53418

	630-734, - strand, RNAmicro p=0.999761
	611-720, + strand, RNAmicro p=0.975218

	65-879, gnl\|bosTau2\|chr3 (72381257-72380441)
	65-879, gnl\|Hg17\|chr1 (41742107-41741226)