Non-Coding RNA Search

Tra1-TCH01A010058

Sequence:


               
               TAATAGTGATTCAGGAGTAGGTGTCCTGACTTCTTCATTTCTTGCTCTGACTAGGTCTGT
ATTAAGACTCTGTTACAGAAGGGACAGAACCCCACATCGAGCTGGCTTGAGAAATAAGTG
GGCTTCAGGCATGGCTGGAACTAGGCACAAATGTCCTAATTGGTCTCTCTTTATCCTGCT
CACCTCTATACTGGCTTCTTTTTCAAAGAGAATTTGCCAGTAGAAAGTGCCTCCTTCTCA
GTAATTCTACACCACATGCCAGATAGAATGGCACTGTCATTGGCCCAGCTTAGGTCCCAT
GCCATTCTTGTGGCCTTGAGAATGAACGGAGTGCTCTAGTTGGCCAGCCCCACCCAGACT
GCAAGGACAAAGATTGTGAGGGGGTGGGGGGTCCCCAAGAGAAAAATCAGAGGGTAGTTA
CTAGAAGAGGGAGGACTGGGTGCTAGGAGGCCAGAAGGCCAGATGTCCACTACAGGATCT
CCATCCTGAAATCTGTAAAATAGGAATAACAGTCTCCACTCTTCTGACACCCTAGGGACT
CACAGGACTCAaagaacccaactagtatccatgaggatgcaggttcgatccctggccttg
ctcagtgggttaaggatccagtgttgtcatgagctctgttataggtcgcagacatggctc
agatcccgagttgctgtggctgcggtgtangtcggcaggtacagctccaattcgacccct
agccttcgaacctccatatgccgTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATAGTGATTCAGGAGTAGGTGTCCTGACTTCTTCATTTCTTGCTCTGACTAGGTCTGT
ATTAAGACTCTGTTACAGAAGGGACAGAACCCCACATCGAGCTGGCTTGAGAAATAAGTG
GGCTTCAGGCATGGCTGGAACTAGGCACAAATGTCCTAATTGGTCTCTCTTTATCCTGCT
CACCTCTATACTGGCTTCTTTTTCAAAGAGAATTTGCCAGTAGAAAGTGCCTCCTTCTCA
GTAATTCTACACCACATGCCAGATAGAATGGCACTGTCATTGGCCCAGCTTAGGTCCCAT
GCCATTCTTGTGGCCTTGAGAATGAACGGAGTGCTCTAGTTGGCCAGCCCCACCCAGACT
GCAAGGACAAAGATTGTGAGGGGGTGGGGGGTCCCCAAGAGAAAAATCAGAGGGTAGTTA
CTAGAAGAGGGAGGACTGGGTGCTAGGAGGCCAGAAGGCCAGATGTCCACTACAGGATCT
CCATCCTGAAATCTGTAAAATAGGAATAACAGTCTCCACTCTTCTGACACCCTAGGGACT
CACAGGACTCAaagaacccaactagtatccatgaggatgcaggttcgatccctggccttg
ctcagtgggttaaggatccagtgttgtcatgagctctgttataggtcgcagacatggctc
agatcccgagttgctgtggctgcggtgtangtcggcaggtacagctccaattcgacccct
agccttcgaacctccatatgccgTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               325-535, + strand, RNAz p=0.687002

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-535, + strand, RNAz p=0.687002

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-554, gnl|bosTau2|chr3 (61375455-61374920)
               

               
               23-554, gnl|Hg17|chr5 (172295714-172296277)
               

               
               23-554, gnl|Mm7|chr17 (24827147-24827675)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-554, gnl|bosTau2|chr3 (61375455-61374920)
               

               
               23-554, gnl|Hg17|chr5 (172295714-172296277)
               

               
               23-554, gnl|Mm7|chr17 (24827147-24827675)

	23-554, gnl\|bosTau2\|chr3 (61375455-61374920)
	23-554, gnl\|Hg17\|chr5 (172295714-172296277)
	23-554, gnl\|Mm7\|chr17 (24827147-24827675)