Non-Coding RNA Search

Tra1-TCH01A040016

Sequence:


               
               TGTTCTACCCTTTCTTTGTTCACGGGAGGCAAACACCTTATTTTCTTCTTTGCCCTCTGA
ATCTAAAACATGCACTTCAGAGATTCATATTTCATATCTGAAACAATCCCATTCCATCCT
ATTCGTTTTTCTAGCTCTGATTGTTTTAACCAGCCACATAATACATGGTTTTATACTTTA
GGGGCAAAATGATGTCATAAGGCCTCAAGTCTTGTGTATTGATCTTTAGCACTTTCACTG
TGCTTTTATATGTATTCTTTATTTTAACCCTTCATAACAACTGTGTGTGGAAGAAGACCA
GGACTTTTTTATTCCTCTTTTATATGAGAGGAGAAAGGCCCAGCAAAGCCAGGTTTTCAC
AACCGATGCTACCTGGGGCCTCCTTGGACCACAGCCTTACGCCTTTCTTGCTGTGTGTGG
CAGCCATGGATGTGACAGAGGGTCACCCTGTGTGCATGTGCGTGCATGTTTCTGATGTTT
TGCATGTTCATTTATCAGGAGCTCATTGAACATCTTCAGAAAGAGAGGAATTATAAATCT
ATATCCCCACCTTTAAATTGCTGATTGAGGAAATGAGACACATCTGGTAAATCTGCTGAT
TACATACTGTGGCCTAGTGGTATCATCTCAAGGACTTTCTTATCAGAGGTAGTGAGATGC
TTGTAGAAATACACATGTGTTTGTTCCCGGTCTAACACAACTGTGTTTTACTTTCCCCAC
TGAAAGCAGGATGGGGAAAGGGGCTCCCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCTACCCTTTCTTTGTTCACGGGAGGCAAACACCTTATTTTCTTCTTTGCCCTCTGA
ATCTAAAACATGCACTTCAGAGATTCATATTTCATATCTGAAACAATCCCATTCCATCCT
ATTCGTTTTTCTAGCTCTGATTGTTTTAACCAGCCACATAATACATGGTTTTATACTTTA
GGGGCAAAATGATGTCATAAGGCCTCAAGTCTTGTGTATTGATCTTTAGCACTTTCACTG
TGCTTTTATATGTATTCTTTATTTTAACCCTTCATAACAACTGTGTGTGGAAGAAGACCA
GGACTTTTTTATTCCTCTTTTATATGAGAGGAGAAAGGCCCAGCAAAGCCAGGTTTTCAC
AACCGATGCTACCTGGGGCCTCCTTGGACCACAGCCTTACGCCTTTCTTGCTGTGTGTGG
CAGCCATGGATGTGACAGAGGGTCACCCTGTGTGCATGTGCGTGCATGTTTCTGATGTTT
TGCATGTTCATTTATCAGGAGCTCATTGAACATCTTCAGAAAGAGAGGAATTATAAATCT
ATATCCCCACCTTTAAATTGCTGATTGAGGAAATGAGACACATCTGGTAAATCTGCTGAT
TACATACTGTGGCCTAGTGGTATCATCTCAAGGACTTTCTTATCAGAGGTAGTGAGATGC
TTGTAGAAATACACATGTGTTTGTTCCCGGTCTAACACAACTGTGTTTTACTTTCCCCAC
TGAAAGCAGGATGGGGAAAGGGGCTCCCTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               156-275, + strand, RNAz p=0.980547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-275, + strand, RNAz p=0.980547

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               38-478, gnl|bosTau2|chr24 (17944824-17944381)
               

               
               38-478, gnl|Hg17|chr18 (30912215-30912642)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-478, gnl|bosTau2|chr24 (17944824-17944381)
               

               
               38-478, gnl|Hg17|chr18 (30912215-30912642)

	38-478, gnl\|bosTau2\|chr24 (17944824-17944381)
	38-478, gnl\|Hg17\|chr18 (30912215-30912642)