Non-Coding RNA Search

Tra1-TCH01A040036

Sequence:


               
               TACCAGCCTGGGTCCCATAGCTTCAGAAGGCATGCTGCACCCTAGCAATTGATTCCCGGG
GCTCCGGAGCGTGCTGCCCTGGGCAGGGGGCTCCTGGGCTGGATAGGGGGTGTGTTTGAG
TTTAATGAGTTTCTCACCACAGTCGCTTGGTTGCCTGCTTCTGCAGCCTGTGAGTGCCAT
CTGCAAGGATCTGTCAATGCTTTCTGCGATCCCGTCACTGGCCAGTGCCACTGTTTCCAG
GGGGTGTATGCGAGGCAATGTGACCGGTGTTTACCTGGGTACTGGGGCTTTCCAAGTTGC
CAGCCCTGCCAGTGCAATGGCCACGCGGAGGACTGCGACTCAGTGACAGGGGAATGCTCG
AGCTGCCAGGACTACACCACGGGTCATAACTGTGAAAGGTACGTGGACGAGGCCTCTGGA
AAGTGAGGGGAACGAGATTGGTTTTGGCTGAGCAAACAGCATCGTGGACAAACCACAGGC
TGCATCTCTCCCAGGCTCCAGTCGGCGCCTTCATTTCCAGCTACCTTGGGACGTTCTAGG
AACTCACTCGTTGACCCAGTACCTGTTTAGTTCGCAGCTGCTGTGTGCCAGGCACTGTTC
TGGTGCTGGGGATATGGCTGAGGACAAAACCGATGTGAATTGCCCTCTTGGCGAGGTCCC
CTTAGAGGTCCCCTTAAGGCTGTGCAGAAATCATCAGTCTCAGCACATTCTGGCTGAGAA
TGAGAGTTGTGCAATGGTAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCAGCCTGGGTCCCATAGCTTCAGAAGGCATGCTGCACCCTAGCAATTGATTCCCGGG
GCTCCGGAGCGTGCTGCCCTGGGCAGGGGGCTCCTGGGCTGGATAGGGGGTGTGTTTGAG
TTTAATGAGTTTCTCACCACAGTCGCTTGGTTGCCTGCTTCTGCAGCCTGTGAGTGCCAT
CTGCAAGGATCTGTCAATGCTTTCTGCGATCCCGTCACTGGCCAGTGCCACTGTTTCCAG
GGGGTGTATGCGAGGCAATGTGACCGGTGTTTACCTGGGTACTGGGGCTTTCCAAGTTGC
CAGCCCTGCCAGTGCAATGGCCACGCGGAGGACTGCGACTCAGTGACAGGGGAATGCTCG
AGCTGCCAGGACTACACCACGGGTCATAACTGTGAAAGGTACGTGGACGAGGCCTCTGGA
AAGTGAGGGGAACGAGATTGGTTTTGGCTGAGCAAACAGCATCGTGGACAAACCACAGGC
TGCATCTCTCCCAGGCTCCAGTCGGCGCCTTCATTTCCAGCTACCTTGGGACGTTCTAGG
AACTCACTCGTTGACCCAGTACCTGTTTAGTTCGCAGCTGCTGTGTGCCAGGCACTGTTC
TGGTGCTGGGGATATGGCTGAGGACAAAACCGATGTGAATTGCCCTCTTGGCGAGGTCCC
CTTAGAGGTCCCCTTAAGGCTGTGCAGAAATCATCAGTCTCAGCACATTCTGGCTGAGAA
TGAGAGTTGTGCAATGGTAGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               210-329, + strand, RNAz p=0.538565

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-329, + strand, RNAz p=0.538565

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-739, gnl|bosTau2|chr4 (20149494-20150201)
               

               
               19-739, gnl|Hg17|chr7 (107194029-107193309)
               

               
               19-739, gnl|Mm7|chr12 (29143227-29144021)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-739, gnl|bosTau2|chr4 (20149494-20150201)
               

               
               19-739, gnl|Hg17|chr7 (107194029-107193309)
               

               
               19-739, gnl|Mm7|chr12 (29143227-29144021)

	19-739, gnl\|bosTau2\|chr4 (20149494-20150201)
	19-739, gnl\|Hg17\|chr7 (107194029-107193309)
	19-739, gnl\|Mm7\|chr12 (29143227-29144021)