Non-Coding RNA Search

Tra1-TCH01A050049

Sequence:


               
               ATTCTTATTATAGCTATCCTAGTGTGTGTAAAGTGTCCTCCTAAGATCTTAATAGCTGAG
GACATACTACTTAGATCATGGATCAAAGGTACATAATACCTTCGTGGGTTTTCTAGAACC
AGATACTTCCATGAATGGGCTGGCTTTTGCACGTATAAAATGGCCAAGATAACTAAGAGG
CCTCGGTGGAGCCTCATGGAGTGGAGAGCCTGAGAAGGTGATCAAGTTTGTCTTTCCTCC
TGGCTGAGAAAGGGAAGTGGCACCGCCACGTGATGGAGAGGAGAGAGGACTTTTCTGGCC
GGAATTCTTGAGTCCGTCTCTGCCCCATGTCCCCCGTTGTACACCAGATAAAGTGGAGTG
AGCTTGCGCCATCCACGGGGACCGATTCATGCACCATTGCTTATGCATGAGCCCTCCTTC
TCCAGCTTGCATTTCAATGTTATTTATTTTTGGAGGTTTTTTGAAGATGAAAGCCAAGTT
TATCTTCTCTCACATTTCATCCCTTGGAATCCTTGCAATGGCTTGGCCGGGCAGGGACTA
CAGTAGCCTTCCACGTCTTAGGTGACGTTCTGGAATGGGGCCCTTTTGTGTCCTCTTTTC
CTCAGGGTTTCCGGGAGCGTGGATGAACTCCTCAATATCACCTCCAAGTCCTGTGTCAGA
GGTCACCGGAGGGGCCATGGAAGACCGCGGGTCTGGGGACAGTGAGTGCCAATCCCTGGG
AAACTCCCGTGGGCCTTGCCATCCTCTCGGGACCTTTGAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTTATTATAGCTATCCTAGTGTGTGTAAAGTGTCCTCCTAAGATCTTAATAGCTGAG
GACATACTACTTAGATCATGGATCAAAGGTACATAATACCTTCGTGGGTTTTCTAGAACC
AGATACTTCCATGAATGGGCTGGCTTTTGCACGTATAAAATGGCCAAGATAACTAAGAGG
CCTCGGTGGAGCCTCATGGAGTGGAGAGCCTGAGAAGGTGATCAAGTTTGTCTTTCCTCC
TGGCTGAGAAAGGGAAGTGGCACCGCCACGTGATGGAGAGGAGAGAGGACTTTTCTGGCC
GGAATTCTTGAGTCCGTCTCTGCCCCATGTCCCCCGTTGTACACCAGATAAAGTGGAGTG
AGCTTGCGCCATCCACGGGGACCGATTCATGCACCATTGCTTATGCATGAGCCCTCCTTC
TCCAGCTTGCATTTCAATGTTATTTATTTTTGGAGGTTTTTTGAAGATGAAAGCCAAGTT
TATCTTCTCTCACATTTCATCCCTTGGAATCCTTGCAATGGCTTGGCCGGGCAGGGACTA
CAGTAGCCTTCCACGTCTTAGGTGACGTTCTGGAATGGGGCCCTTTTGTGTCCTCTTTTC
CTCAGGGTTTCCGGGAGCGTGGATGAACTCCTCAATATCACCTCCAAGTCCTGTGTCAGA
GGTCACCGGAGGGGCCATGGAAGACCGCGGGTCTGGGGACAGTGAGTGCCAATCCCTGGG
AAACTCCCGTGGGCCTTGCCATCCTCTCGGGACCTTTGAAATAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               554-669, + strand, RNAz p=0.951597

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-669, + strand, RNAz p=0.951597

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               138-765, gnl|bosTau2|chr26 (28962101-28962729)
               

               
               138-765, gnl|Hg17|chr10 (123224953-123224318)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-765, gnl|bosTau2|chr26 (28962101-28962729)
               

               
               138-765, gnl|Hg17|chr10 (123224953-123224318)

	138-765, gnl\|bosTau2\|chr26 (28962101-28962729)
	138-765, gnl\|Hg17\|chr10 (123224953-123224318)