Non-Coding RNA Search

Tra1-TCH01A050072

Sequence:


               
               CGAAGACTTGACCATGGATGCCGGACCGTCTTCCCTTCTCCCGATTCCACATCCTCTGTG
ATTTCTCCCTTTCCGCTTCAGACTCAGGACATAACCACGTATAAAATAAGTGAGAAAAAG
TCCAGCGAGAAGATCCCCGAATGGTCCTGAAAATGAAATTAGCTTGGAAAAAGTACAAAA
AGTACCAGCATTCTTTTTCTTTTCTAATTTAGGTCCTTTCTAACATCACAGAACAATGCA
AGTGCATCCTAATTATTGGTGTCTGTGAAGGACCTTTGAATTACTTGATATGCAGAGTTG
ACATGAGATATACACTGTCCTCCACAGGCAGGTAATGACAGAGTCCAGGCCTGGCTTTGT
TGATGGGGACATATTGCCTCCCAGACTTACAAGAGATTCCAAAATCCATGCTCCCCTGCA
AAGAGTTATCTCTTGCAGAGAGCCCTGTCGCCTTCTGTTTACCTTTCTCCCCGCTCTGCA
GTACAGATGACAATCCTGAACTTGGGTCCAGATGAGATTTAGTAATTCATGGGCAAAGCA
GCTGGGGACTGTGAGCTTCTGGGCTGTGGATAAGGAGCTAGTCTGGTGCATTTTCTCAGT
GAAAGAATTGAGAATTTGCAAACTTAGATGCATTGGCTTCTTGCCCTGTTACATTTAGAG
TAATGCTGATGATAAATCGGTAACTATGGGTTTCACGGTGGAAGGGCGCAAAAGAACTGA
CCGAAGTAATCTAGAAAACAGATGTCTTTAGTTGGTTTAAAGTAAATTCTCAAGACCAGA
TTTAAAGAAAGCTATGTGGAGGCCAGTGACCACGACCATTTTATTAGAGTGTTTTTCTCT
CATACGGTTTTTCTTCCTACATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAGACTTGACCATGGATGCCGGACCGTCTTCCCTTCTCCCGATTCCACATCCTCTGTG
ATTTCTCCCTTTCCGCTTCAGACTCAGGACATAACCACGTATAAAATAAGTGAGAAAAAG
TCCAGCGAGAAGATCCCCGAATGGTCCTGAAAATGAAATTAGCTTGGAAAAAGTACAAAA
AGTACCAGCATTCTTTTTCTTTTCTAATTTAGGTCCTTTCTAACATCACAGAACAATGCA
AGTGCATCCTAATTATTGGTGTCTGTGAAGGACCTTTGAATTACTTGATATGCAGAGTTG
ACATGAGATATACACTGTCCTCCACAGGCAGGTAATGACAGAGTCCAGGCCTGGCTTTGT
TGATGGGGACATATTGCCTCCCAGACTTACAAGAGATTCCAAAATCCATGCTCCCCTGCA
AAGAGTTATCTCTTGCAGAGAGCCCTGTCGCCTTCTGTTTACCTTTCTCCCCGCTCTGCA
GTACAGATGACAATCCTGAACTTGGGTCCAGATGAGATTTAGTAATTCATGGGCAAAGCA
GCTGGGGACTGTGAGCTTCTGGGCTGTGGATAAGGAGCTAGTCTGGTGCATTTTCTCAGT
GAAAGAATTGAGAATTTGCAAACTTAGATGCATTGGCTTCTTGCCCTGTTACATTTAGAG
TAATGCTGATGATAAATCGGTAACTATGGGTTTCACGGTGGAAGGGCGCAAAAGAACTGA
CCGAAGTAATCTAGAAAACAGATGTCTTTAGTTGGTTTAAAGTAAATTCTCAAGACCAGA
TTTAAAGAAAGCTATGTGGAGGCCAGTGACCACGACCATTTTATTAGAGTGTTTTTCTCT
CATACGGTTTTTCTTCCTACATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               540-653, + strand, RNAz p=0.691952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               540-653, + strand, RNAz p=0.691952

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-836, gnl|bosTau2|chr27 (26864247-26863428)
               

               
               20-836, gnl|Hg17|chr3 (25506611-25507429)
               

               
               20-836, gnl|Mm7|chr14 (14333154-14332328)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-836, gnl|bosTau2|chr27 (26864247-26863428)
               

               
               20-836, gnl|Hg17|chr3 (25506611-25507429)
               

               
               20-836, gnl|Mm7|chr14 (14333154-14332328)

	20-836, gnl\|bosTau2\|chr27 (26864247-26863428)
	20-836, gnl\|Hg17\|chr3 (25506611-25507429)
	20-836, gnl\|Mm7\|chr14 (14333154-14332328)