Non-Coding RNA Search

Tra1-TCH01A060005

Sequence:


               
               ATATAATAATTTACATCTACCAACTCCAAACTCCCTATCCATCCTATTTCCTCCCTCCTT
CCCCTCAGCAACCACAAGTCTGTTTTCCATGTCTGTGAGTCTGtttctattctgtagata
ggttcacctgtgccatattttagattccatgtataagtaatatcatacggtatttgcctt
tctctttctggcttacttcacttagtatgaaaatctctagttgcatgcacattgctacaa
atggcattacttcgttcttttttatggctgagtagtattccagtgtatttatgtaccaca
tcttcttaatccattcatctgttgatggacatttagCCATTTAGTTTTATCCTGAAGGTG
TATTTATTCTTTATTTGTCTACATTTTGGTCTGTCTGAAGCTGCATCCTTTTCCTCCCGG
CATGTACTCTTTGCTATCAGAGTACCACCAGGCTGTGGTAAGCACGAAAGTCATTCACAG
AAAGATTCAAGAGACGTTTCTGTTTCCTGTGGTCTTTCAGTCACTTTCCAGATCAAAAAA
TTTATGGTATAGCTGTGGACATTATTGATTGCTTTTCATGtgtatttgtgtactagggct
gttgtaaaagtaccacaaattgagcggctgaaacaacagtgatttattatctcataggct
agaagcatgagatcaagatattggtggggttggttccttctgagggcggtgagagcaaat
ctgttgctatttctccgcatgtatctggtggctttctgtcagtctttggcattccttggc
ttctagaagcatcatcccagtctttgccttcatcttcccatggcatcgtccctatgtATG
AGTCTCTCCAACGTTTCCCTTTTAATAAGAATGGCAGTCAGGAGTTCCCACGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATAATAATTTACATCTACCAACTCCAAACTCCCTATCCATCCTATTTCCTCCCTCCTT
CCCCTCAGCAACCACAAGTCTGTTTTCCATGTCTGTGAGTCTGtttctattctgtagata
ggttcacctgtgccatattttagattccatgtataagtaatatcatacggtatttgcctt
tctctttctggcttacttcacttagtatgaaaatctctagttgcatgcacattgctacaa
atggcattacttcgttcttttttatggctgagtagtattccagtgtatttatgtaccaca
tcttcttaatccattcatctgttgatggacatttagCCATTTAGTTTTATCCTGAAGGTG
TATTTATTCTTTATTTGTCTACATTTTGGTCTGTCTGAAGCTGCATCCTTTTCCTCCCGG
CATGTACTCTTTGCTATCAGAGTACCACCAGGCTGTGGTAAGCACGAAAGTCATTCACAG
AAAGATTCAAGAGACGTTTCTGTTTCCTGTGGTCTTTCAGTCACTTTCCAGATCAAAAAA
TTTATGGTATAGCTGTGGACATTATTGATTGCTTTTCATGtgtatttgtgtactagggct
gttgtaaaagtaccacaaattgagcggctgaaacaacagtgatttattatctcataggct
agaagcatgagatcaagatattggtggggttggttccttctgagggcggtgagagcaaat
ctgttgctatttctccgcatgtatctggtggctttctgtcagtctttggcattccttggc
ttctagaagcatcatcccagtctttgccttcatcttcccatggcatcgtccctatgtATG
AGTCTCTCCAACGTTTCCCTTTTAATAAGAATGGCAGTCAGGAGTTCCCACGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56492562|emb|CAI01941.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56492562|emb|CAI01941.1|

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               1-336, gnl|bosTau2|chr10 (20095757-20095423)
               


               
               687-880, gnl|bosTau2|chr25 (3437289-3437092)
               

               
               687-880, gnl|canFam2|chr6 (41262998-41262834)
               

               
               687-880, gnl|hg17|chr16 (2949176-2949325)
               

               
               687-880, gnl|panTro1|chr18_random (16623163-16623312)
               

               
               687-880, gnl|rheMac2|chr20 (3099827-3099975)
               


               
               705-871, gnl|bosTau2|chr1 (16177063-16176892)
               

               
               705-871, gnl|Hg17|chr3 (82008416-82007929)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr10 (20095757-20095423)
               


               
               687-880, gnl|bosTau2|chr25 (3437289-3437092)
               

               
               687-880, gnl|canFam2|chr6 (41262998-41262834)
               

               
               687-880, gnl|hg17|chr16 (2949176-2949325)
               

               
               687-880, gnl|panTro1|chr18_random (16623163-16623312)
               

               
               687-880, gnl|rheMac2|chr20 (3099827-3099975)
               


               
               705-871, gnl|bosTau2|chr1 (16177063-16176892)
               

               
               705-871, gnl|Hg17|chr3 (82008416-82007929)

	1-336, gnl\|bosTau2\|chr10 (20095757-20095423)

	687-880, gnl\|bosTau2\|chr25 (3437289-3437092)
	687-880, gnl\|canFam2\|chr6 (41262998-41262834)
	687-880, gnl\|hg17\|chr16 (2949176-2949325)
	687-880, gnl\|panTro1\|chr18_random (16623163-16623312)
	687-880, gnl\|rheMac2\|chr20 (3099827-3099975)

	705-871, gnl\|bosTau2\|chr1 (16177063-16176892)
	705-871, gnl\|Hg17\|chr3 (82008416-82007929)