Non-Coding RNA Search

Tra1-TCH01A060072

Sequence:


               
               GGAATCCCCTGACTGGGTCCCTTCCCTGGTGGGAGTCAGACTGATGTTGTCAGGGGGGGG
CCTCAGGAAGGAGGGGAGATTTAGTCAAGTCCAGAAAGCAGAGGTGACTCTAGGTGGGTG
GGGAAGGGGAGAGTAGTTTCGAGGTTTGGAGACGGGGCAGTGTAGGATGAGTAGAGGTCA
GTTTATGAAGGGCCTGGGATGCCAGGCCCAAGTTCTGGCCTTTGTAACAGGGATTTGGTC
CTTATCCTGTAATGAGTCCTGATGTCAGCAGATCTGGTGTCAGGTTTCAAAGCTTTCAAG
CAAACTGAGAAATGCCACCAATGAATCTGAGTGGCAGATAGGGACTAAATATCCAGGAAG
GTGTTAGACAGTACACACCTGCCAGCTACCTCAGAATACTCAGCCGGGAGAACCCCAGGT
TGGGGTAGAGGACAGGAGGGGTTGGAACTGCCTCAGTGGTAAGAACCCAGAAGTAGGTCC
TCTCTTGCTGGGATGAAGAGCTTCACTTTATCTGATCACAAGGAAACTCTGGGGGTACTA
GAAGGGGCAAGTAGAGGTATTCTGATATGCCTTGGCTGTGACACCCCCCCTCCCCGAGCT
GGCAAGGGCTGTATTTTATGAGTAATAAAATATGCTAGTTGAAGTCTCCCATTATCTGCA
AGCTTGCCTCACAGACAATCCCATCCAGTGCAGTCTTTTCAACTGTATTCTTTGCCATGG
TGTTAAGTGGAAGAATTTGACAGTGTGCCCCAGTGCAAGACTTTGTGTTCTAAATTTTCC
TTACCATCTGCTTTGCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCCCCTGACTGGGTCCCTTCCCTGGTGGGAGTCAGACTGATGTTGTCAGGGGGGGG
CCTCAGGAAGGAGGGGAGATTTAGTCAAGTCCAGAAAGCAGAGGTGACTCTAGGTGGGTG
GGGAAGGGGAGAGTAGTTTCGAGGTTTGGAGACGGGGCAGTGTAGGATGAGTAGAGGTCA
GTTTATGAAGGGCCTGGGATGCCAGGCCCAAGTTCTGGCCTTTGTAACAGGGATTTGGTC
CTTATCCTGTAATGAGTCCTGATGTCAGCAGATCTGGTGTCAGGTTTCAAAGCTTTCAAG
CAAACTGAGAAATGCCACCAATGAATCTGAGTGGCAGATAGGGACTAAATATCCAGGAAG
GTGTTAGACAGTACACACCTGCCAGCTACCTCAGAATACTCAGCCGGGAGAACCCCAGGT
TGGGGTAGAGGACAGGAGGGGTTGGAACTGCCTCAGTGGTAAGAACCCAGAAGTAGGTCC
TCTCTTGCTGGGATGAAGAGCTTCACTTTATCTGATCACAAGGAAACTCTGGGGGTACTA
GAAGGGGCAAGTAGAGGTATTCTGATATGCCTTGGCTGTGACACCCCCCCTCCCCGAGCT
GGCAAGGGCTGTATTTTATGAGTAATAAAATATGCTAGTTGAAGTCTCCCATTATCTGCA
AGCTTGCCTCACAGACAATCCCATCCAGTGCAGTCTTTTCAACTGTATTCTTTGCCATGG
TGTTAAGTGGAAGAATTTGACAGTGTGCCCCAGTGCAAGACTTTGTGTTCTAAATTTTCC
TTACCATCTGCTTTGCTTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               529-621, + strand, RNAz p=0.886922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-621, + strand, RNAz p=0.886922

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-353, gnl|bosTau2|chr24 (15446624-15446323)
               


               
               529-801, gnl|bosTau2|chr24 (15445895-15445630)
               

               
               529-801, gnl|Mm7|chr18 (25115583-25115878)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-353, gnl|bosTau2|chr24 (15446624-15446323)
               


               
               529-801, gnl|bosTau2|chr24 (15445895-15445630)
               

               
               529-801, gnl|Mm7|chr18 (25115583-25115878)

	51-353, gnl\|bosTau2\|chr24 (15446624-15446323)

	529-801, gnl\|bosTau2\|chr24 (15445895-15445630)
	529-801, gnl\|Mm7\|chr18 (25115583-25115878)