Non-Coding RNA Search

Tra1-TCH01A060087

Sequence:


               
               TATAAAGGAGTCACTTTGCTATACACCTGAAACATTTTAAATCAACTATACTTCAATAAA
ACAATTAAGGAAAAGGGTGCGCCACAGAAAAAGAAAACAAAGAAACGAAGCCCACATTAT
TCAGGTAGAGATTGATGCACGCTGAGGTTCGCAGAAGAGACCAGCCTCTCTGACTGCTGC
TGTCTCAGCAGCTCTAGCTCTCCCACCCCAGCTCAGATCAAAAGAATGTGGACATCTCTT
CCTCTGTGATGCAGTGGGGAGAGGAAGGGCATTGAGTGTTATCATTTGAAATGAGAAGGA
TGGGAGAATGGAAGGGTGAAAACAGTTGCTGCAGAGAAAGTGATCCTACACCAGCCAGAG
TTGAGTAGAAAGCCTGGGCAGTTTTAAAGAGGCAGCTAAAGGTCTCAGTTTCCTTCCTAG
AACCAATGGACATGTTACTGTGATTTTTTTTCCGAGATGAGAGAAAATGAATGGGGTAAT
GAGGTTCATGGATTGGCACATGGATGCTGAGAAAGTCATAAAAATAAATGTTAATGTGGA
CATCACTGACATTGGATGGCTTGGAGGTCCCATCTCAACAAGGAGGCTCGTGGAGCCAGG
ATGGGTAAGGTCGAGGGCGGTAGCAAGAACCTCCAATGAGGATGAGGGGCAGGACCTCAA
AGAATAAGGAAGTGGAGACATAGGTAAACGGAAAGCTACAACCAGAGATCTGGAAGCCTG
GATCTTAAAGGTGGAGTATTTCTGGGCAGTGATAAGCTCCAAGGTGTGGTGGGGCTTGTG
TTTAGTGTAAGTAGAATGGAGGTAACACCTTGAGGTAGAGGAGGAAGTCTCTGAGCTGTA
CCTTTGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAAAGGAGTCACTTTGCTATACACCTGAAACATTTTAAATCAACTATACTTCAATAAA
ACAATTAAGGAAAAGGGTGCGCCACAGAAAAAGAAAACAAAGAAACGAAGCCCACATTAT
TCAGGTAGAGATTGATGCACGCTGAGGTTCGCAGAAGAGACCAGCCTCTCTGACTGCTGC
TGTCTCAGCAGCTCTAGCTCTCCCACCCCAGCTCAGATCAAAAGAATGTGGACATCTCTT
CCTCTGTGATGCAGTGGGGAGAGGAAGGGCATTGAGTGTTATCATTTGAAATGAGAAGGA
TGGGAGAATGGAAGGGTGAAAACAGTTGCTGCAGAGAAAGTGATCCTACACCAGCCAGAG
TTGAGTAGAAAGCCTGGGCAGTTTTAAAGAGGCAGCTAAAGGTCTCAGTTTCCTTCCTAG
AACCAATGGACATGTTACTGTGATTTTTTTTCCGAGATGAGAGAAAATGAATGGGGTAAT
GAGGTTCATGGATTGGCACATGGATGCTGAGAAAGTCATAAAAATAAATGTTAATGTGGA
CATCACTGACATTGGATGGCTTGGAGGTCCCATCTCAACAAGGAGGCTCGTGGAGCCAGG
ATGGGTAAGGTCGAGGGCGGTAGCAAGAACCTCCAATGAGGATGAGGGGCAGGACCTCAA
AGAATAAGGAAGTGGAGACATAGGTAAACGGAAAGCTACAACCAGAGATCTGGAAGCCTG
GATCTTAAAGGTGGAGTATTTCTGGGCAGTGATAAGCTCCAAGGTGTGGTGGGGCTTGTG
TTTAGTGTAAGTAGAATGGAGGTAACACCTTGAGGTAGAGGAGGAAGTCTCTGAGCTGTA
CCTTTGGGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               642-798, + strand, RNAz p=0.9959

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-798, + strand, RNAz p=0.9959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-628, gnl|bosTau2|chr10 (911652-911052)
               


               
               642-850, gnl|bosTau2|chr10 (910262-910054)
               

               
               642-850, gnl|Mm7|chr13 (92899035-92898439)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-628, gnl|bosTau2|chr10 (911652-911052)
               


               
               642-850, gnl|bosTau2|chr10 (910262-910054)
               

               
               642-850, gnl|Mm7|chr13 (92899035-92898439)

	1-628, gnl\|bosTau2\|chr10 (911652-911052)

	642-850, gnl\|bosTau2\|chr10 (910262-910054)
	642-850, gnl\|Mm7\|chr13 (92899035-92898439)