Non-Coding RNA Search

Tra1-TCH01A070044

Sequence:


               
               AAAAAGGAACACAGTATGAATGGAAAATTAAAAGCAGCAGATCAACAATTAGCCTTAGGG
AGAAAAGTGGGTCCTGACATGTAGACACCAGCAGTGGGGAATCTGTCCAGGGACTACCTA
GCATTCTTGTCCAGTGACTACTGTGACCTGCCTCCCTGGCAAGCCCCATCAAGACCAGAG
GATGGCTTGAGCCCCAGCGCTCCCTAATGCCCTAATATGTGCATCAGGTATAGGGCTTCA
GCAGCTTTCACAAGGCCATTTGTCAGTCATCCCTTACACTGTGAAGAAATCGGAAGTGTT
AGGCCTTTGAAGATGGTAAAGAGGAGGGAAATTTTTTTGTTCTCCTCTTCAGGCTAGAAT
TCATAGGATTCCAGCCTGAACACAAGACAATTAAGTGACAATTCTGGTGTTTGCCCCTGG
ATCGGAGGACCATATTCCCATTATGCCCTGTTGCTTTGCTTATACCCTATTATAAAACAT
AAATCCTTGGCTTCTGTTCCATTCATGATGAAGTCACACAGGGAAAGAATAAAAATTGTA
AGGACCATGAAATGTCAGAGATGTGGGGGAATCAGCTGGCCACATTACTGTCCTTTGTTT
TAAAATGGAAGTTCCTGCTGATCTTAATGGAGAGCCAAGGAAATGTCCTGATGGCAGAAG
AAAGAGTCTCTGTCTGGGAACCAAGGGCCTGGTCCTGAAAACATATCTGTCTTCGTCATA
TCTGAGTAGCTGTGTGACCTANGATCAGCCTGTGTAAAATTTTTCTTTCCAAAAAAAAAA
AAAAAAAAACTTCTTTCCAGGGAGTTCCCGTCCTGGCTGAGTGGTAACTGAACCTGACTA
GTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGAACACAGTATGAATGGAAAATTAAAAGCAGCAGATCAACAATTAGCCTTAGGG
AGAAAAGTGGGTCCTGACATGTAGACACCAGCAGTGGGGAATCTGTCCAGGGACTACCTA
GCATTCTTGTCCAGTGACTACTGTGACCTGCCTCCCTGGCAAGCCCCATCAAGACCAGAG
GATGGCTTGAGCCCCAGCGCTCCCTAATGCCCTAATATGTGCATCAGGTATAGGGCTTCA
GCAGCTTTCACAAGGCCATTTGTCAGTCATCCCTTACACTGTGAAGAAATCGGAAGTGTT
AGGCCTTTGAAGATGGTAAAGAGGAGGGAAATTTTTTTGTTCTCCTCTTCAGGCTAGAAT
TCATAGGATTCCAGCCTGAACACAAGACAATTAAGTGACAATTCTGGTGTTTGCCCCTGG
ATCGGAGGACCATATTCCCATTATGCCCTGTTGCTTTGCTTATACCCTATTATAAAACAT
AAATCCTTGGCTTCTGTTCCATTCATGATGAAGTCACACAGGGAAAGAATAAAAATTGTA
AGGACCATGAAATGTCAGAGATGTGGGGGAATCAGCTGGCCACATTACTGTCCTTTGTTT
TAAAATGGAAGTTCCTGCTGATCTTAATGGAGAGCCAAGGAAATGTCCTGATGGCAGAAG
AAAGAGTCTCTGTCTGGGAACCAAGGGCCTGGTCCTGAAAACATATCTGTCTTCGTCATA
TCTGAGTAGCTGTGTGACCTANGATCAGCCTGTGTAAAATTTTTCTTTCCAAAAAAAAAA
AAAAAAAAACTTCTTTCCAGGGAGTTCCCGTCCTGGCTGAGTGGTAACTGAACCTGACTA
GTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               239-361, + strand, RNAz p=0.999896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-361, + strand, RNAz p=0.999896

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-361, gnl|bosTau2|chr18 (14082277-14081927)
               

               
               1-361, gnl|Hg17|chr16 (67586673-67587023)
               


               
               426-769, gnl|bosTau2|chr18 (14081926-14081607)
               

               
               426-769, gnl|Mm7|chr8 (105401910-105402265)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-361, gnl|bosTau2|chr18 (14082277-14081927)
               

               
               1-361, gnl|Hg17|chr16 (67586673-67587023)
               


               
               426-769, gnl|bosTau2|chr18 (14081926-14081607)
               

               
               426-769, gnl|Mm7|chr8 (105401910-105402265)

	1-361, gnl\|bosTau2\|chr18 (14082277-14081927)
	1-361, gnl\|Hg17\|chr16 (67586673-67587023)

	426-769, gnl\|bosTau2\|chr18 (14081926-14081607)
	426-769, gnl\|Mm7\|chr8 (105401910-105402265)