Non-Coding RNA Search

Tra1-TCH01A070095

Sequence:


               
               AGAATGTTTTCGGGAGGTTCTTTCCATGGACCCCAAAGACACAAGTGGGCATTTTAAAAA
TGAGTTGCAAAATGGTATTAAAATTTCATTTCAAATATGTATACTTACGCCCTCTATACA
TGCCAGCCCTCAGAATTTGGAGGATGGAAAGCATTTAGACTAAGTGTATTCCATGGCTGT
GGATCTGATTGTCCTTTCTTCCTCATTCTAGATTTAGTGTCTACTTCCCCATTTTCAAAT
CTCAGAAAGTTGCAAGCTCCCTTGTGGCAGCAAGGGTAAAGCTGGCTGGAGAGGAAAGGC
CAAGGGTTGGCAAGTATGTACCAATGACTCATTTCACAAGTGCCAGCCACAGAAGGCAGA
AACCACCACAGGGGAGGTAGTGATACTGCTGGCTTACTGCCACCAGCTACCAGAGTCCCA
GCCTCATTACCCCACCCCGGGCCTCTGAGCCAAATAAAGCCATATTCCTGTTGAGCCTAT
TTGCAGACAAAAGTGAGATGGGGAAGTAGCCAAATAGTAGAAAGACTATTCTCATGAAAT
GAACACAGAGAACTGGGTTCCTTTTCTTCAAACTCTACTGTTACACATTTGGGGACAGTC
CAAAGACCACCCATATTTTGAGAGCATTCTCCTTAGAGGCTGTGTGGTGGGATAGACAGA
GTCTAGACTGTAGAGTCTGGGATTTGGGTCCAGATGCTGGCTTCTTATGTAATGGCTATG
AAaccctgggcaagtgacttaatctctctgagccacagtttcctcaagtgtgaaatgggg
TGAAAGGGGGCTCATTTTGAAAGCCTGTTGTGAGGATTGAAAAATAATACATGTTCCTCT
TCTTCTTTTNCCCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATGTTTTCGGGAGGTTCTTTCCATGGACCCCAAAGACACAAGTGGGCATTTTAAAAA
TGAGTTGCAAAATGGTATTAAAATTTCATTTCAAATATGTATACTTACGCCCTCTATACA
TGCCAGCCCTCAGAATTTGGAGGATGGAAAGCATTTAGACTAAGTGTATTCCATGGCTGT
GGATCTGATTGTCCTTTCTTCCTCATTCTAGATTTAGTGTCTACTTCCCCATTTTCAAAT
CTCAGAAAGTTGCAAGCTCCCTTGTGGCAGCAAGGGTAAAGCTGGCTGGAGAGGAAAGGC
CAAGGGTTGGCAAGTATGTACCAATGACTCATTTCACAAGTGCCAGCCACAGAAGGCAGA
AACCACCACAGGGGAGGTAGTGATACTGCTGGCTTACTGCCACCAGCTACCAGAGTCCCA
GCCTCATTACCCCACCCCGGGCCTCTGAGCCAAATAAAGCCATATTCCTGTTGAGCCTAT
TTGCAGACAAAAGTGAGATGGGGAAGTAGCCAAATAGTAGAAAGACTATTCTCATGAAAT
GAACACAGAGAACTGGGTTCCTTTTCTTCAAACTCTACTGTTACACATTTGGGGACAGTC
CAAAGACCACCCATATTTTGAGAGCATTCTCCTTAGAGGCTGTGTGGTGGGATAGACAGA
GTCTAGACTGTAGAGTCTGGGATTTGGGTCCAGATGCTGGCTTCTTATGTAATGGCTATG
AAaccctgggcaagtgacttaatctctctgagccacagtttcctcaagtgtgaaatgggg
TGAAAGGGGGCTCATTTTGAAAGCCTGTTGTGAGGATTGAAAAATAATACATGTTCCTCT
TCTTCTTTTNCCCCTTT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               188-298, - strand, RNAz p=0.862325
               

               
               339-456, - strand, RNAz p=0.896249
               

               
               642-758, + strand, RNAz p=0.626807

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-298, - strand, RNAz p=0.862325
               

               
               339-456, - strand, RNAz p=0.896249
               

               
               642-758, + strand, RNAz p=0.626807

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-548, gnl|bosTau2|chr8 (21849467-21850030)
               

               
               1-548, gnl|Hg17|chr9 (288019-287474)
               


               
               564-857, gnl|bosTau2|chr8 (21850337-21850632)
               

               
               564-857, gnl|Hg17|chr9 (287426-287137)
               

               
               564-857, gnl|Mm7|chr19 (24774758-24774491)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-548, gnl|bosTau2|chr8 (21849467-21850030)
               

               
               1-548, gnl|Hg17|chr9 (288019-287474)
               


               
               564-857, gnl|bosTau2|chr8 (21850337-21850632)
               

               
               564-857, gnl|Hg17|chr9 (287426-287137)
               

               
               564-857, gnl|Mm7|chr19 (24774758-24774491)

	188-298, - strand, RNAz p=0.862325
	339-456, - strand, RNAz p=0.896249
	642-758, + strand, RNAz p=0.626807

	1-548, gnl\|bosTau2\|chr8 (21849467-21850030)
	1-548, gnl\|Hg17\|chr9 (288019-287474)

	564-857, gnl\|bosTau2\|chr8 (21850337-21850632)
	564-857, gnl\|Hg17\|chr9 (287426-287137)
	564-857, gnl\|Mm7\|chr19 (24774758-24774491)