Non-Coding RNA Search

Tra1-TCH01A090033

Sequence:


               
               CTGttttggactggataattctttgtggtgaggagctgtcctgtccactgcaggatggtt
agtagcatccttggcctctactcactagatgtccatagcaccacccccctccccctctcc
cagctgtgacaaccaaaaatgtctccaaacactgctaaatgtcccctaaggggacaaaag
ctcctagggttgaggaccactATTCCAGGGCTGGTGAAGCCACAGTTAAAGCTCTAGAGC
TTCAGAGGCTGGCCTGAGGGTGAGGGATCTTAAAGAGCAGAGCTGGGAGGACCTTGTTAG
ATGCTTCTAATCCTGCCTTTTTATTATCTGCTGAGGAAACCAAGGTCCAGAGAGAGCTCA
GCCTCCTGGCTCTGCTTTCTGGGAGTCTAACCAGTATTAGGATCCAGACCTGAATCCTTC
CCACCCAGGACTCTTTCATTATCCCAGAGGCCCTCATTCTTTTCAGGTTGGAGGACCCTT
ATCTAGTTCCAAAAAAAAAATCTGATTTGGTCATGTGTTAATAGTTGTACTTTTAGTACC
CATTGATTGAGAAGGTACGTTATTCCCTCAACCAGTGTTTATTGAATACCCACTATTTTG
TGTCTGTATCCTAGGACTGTGTGTGACATGAATAGTAGTAGATAGTCAAGTGGTGGTTGT
TTTCTTATTTTTTTGTGATTCACCATTAAGTGCATAGGCAGTGCTGGGTTGGTGCATTCA
CAGAGCAGAGTGATAGCTGTGAACCCTGTGGGCTCACAACCATAGACTGGGAACCAACTG
ATGCATTATATCATGAGATTTGAGAGGACAGCAGCCCTAAAACTGCAGGCTTTTTCTGAA
ACCATGAACTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGttttggactggataattctttgtggtgaggagctgtcctgtccactgcaggatggtt
agtagcatccttggcctctactcactagatgtccatagcaccacccccctccccctctcc
cagctgtgacaaccaaaaatgtctccaaacactgctaaatgtcccctaaggggacaaaag
ctcctagggttgaggaccactATTCCAGGGCTGGTGAAGCCACAGTTAAAGCTCTAGAGC
TTCAGAGGCTGGCCTGAGGGTGAGGGATCTTAAAGAGCAGAGCTGGGAGGACCTTGTTAG
ATGCTTCTAATCCTGCCTTTTTATTATCTGCTGAGGAAACCAAGGTCCAGAGAGAGCTCA
GCCTCCTGGCTCTGCTTTCTGGGAGTCTAACCAGTATTAGGATCCAGACCTGAATCCTTC
CCACCCAGGACTCTTTCATTATCCCAGAGGCCCTCATTCTTTTCAGGTTGGAGGACCCTT
ATCTAGTTCCAAAAAAAAAATCTGATTTGGTCATGTGTTAATAGTTGTACTTTTAGTACC
CATTGATTGAGAAGGTACGTTATTCCCTCAACCAGTGTTTATTGAATACCCACTATTTTG
TGTCTGTATCCTAGGACTGTGTGTGACATGAATAGTAGTAGATAGTCAAGTGGTGGTTGT
TTTCTTATTTTTTTGTGATTCACCATTAAGTGCATAGGCAGTGCTGGGTTGGTGCATTCA
CAGAGCAGAGTGATAGCTGTGAACCCTGTGGGCTCACAACCATAGACTGGGAACCAACTG
ATGCATTATATCATGAGATTTGAGAGGACAGCAGCCCTAAAACTGCAGGCTTTTTCTGAA
ACCATGAACTATGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               148-251, + strand, RNAz p=0.984051
               

               
               317-510, - strand, RNAz p=0.993654

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-251, + strand, RNAz p=0.984051
               

               
               317-510, - strand, RNAz p=0.993654

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               29-301, gnl|bosTau2|chr13 (48166241-48165980)
               

               
               29-301, gnl|Hg17|chr20 (31876175-31876452)
               


               
               317-847, gnl|bosTau2|chr13 (48164840-48164304)
               

               
               317-847, gnl|Hg17|chr20 (31876468-31877001)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-301, gnl|bosTau2|chr13 (48166241-48165980)
               

               
               29-301, gnl|Hg17|chr20 (31876175-31876452)
               


               
               317-847, gnl|bosTau2|chr13 (48164840-48164304)
               

               
               317-847, gnl|Hg17|chr20 (31876468-31877001)

	148-251, + strand, RNAz p=0.984051
	317-510, - strand, RNAz p=0.993654

	29-301, gnl\|bosTau2\|chr13 (48166241-48165980)
	29-301, gnl\|Hg17\|chr20 (31876175-31876452)

	317-847, gnl\|bosTau2\|chr13 (48164840-48164304)
	317-847, gnl\|Hg17\|chr20 (31876468-31877001)