Non-Coding RNA Search

Tra1-TCH01A100050

Sequence:


               
               GAAATCCTCATCCTAGGGCTCTAGGAACTTGGAGGAGGTGAGGGTGGATTTCATGGGGCT
TTTCCATGGGTTCCTCAGGGATTTCCTGCAGGGGACCCCCTTAGCATAAGCAACACTTCC
TCTAGCTCACTCCTTTAAGCTTCCTCCTCAGCTCCAGGGCTTCAATCAGTCCAGCCTTCT
TGACCCAGTCCACCCACCATCCCTTGGGAAGGTGACCTCAGGCCAGTCCCCCACCATCCC
TCCAGGTCTCTGGAAAGCATGCTGTGTGTGGATATATTTGATCCCACAATGCACTCAGCT
TTGCTCTCAAGCTAGGGCAGTTCCAGCCCTGCCTCCTGCCTTTAGACTTCCAGGAGTGAG
TCAAATACCAATCCCCAAACTCCAGAGGAACCTTGGTAAAGGGCTCCAAATAATCCTCTT
GAAGCTCCTCTGATGTGGCTCAAGGTGAAGGGAATGTAAATCCTTCCCCTGACCTTGGTG
GATGAACCTGACCCTTGGTGGATGAAACTGACCACAGTGGATGAACTGGACCCTTGGTGG
ATGAGACCGACCCCTAGAGGATTAACCTGACCTTTGGTGGATGAACCTGTCCCCTGAGGG
ATGAACCTAGCCCTTGGTGGAGAAACAGACCCCTGGTGGATGAACTTACAGTCCACTGAC
AACTCTCCTCTCCAAGCCTAGCTGTTTAGGCAGCTTTGTGGGAGATTTGGCAATTCTGGT
GGAGCTGCATTAGGCCCACCCTTTCACAGTGGGGGGGCCTTAAAATCTGTTTTTTTCTTC
TTTCCTTGGGAGATGTGCTGAAGCTCTAAAAGCATGGGAGGAGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATCCTCATCCTAGGGCTCTAGGAACTTGGAGGAGGTGAGGGTGGATTTCATGGGGCT
TTTCCATGGGTTCCTCAGGGATTTCCTGCAGGGGACCCCCTTAGCATAAGCAACACTTCC
TCTAGCTCACTCCTTTAAGCTTCCTCCTCAGCTCCAGGGCTTCAATCAGTCCAGCCTTCT
TGACCCAGTCCACCCACCATCCCTTGGGAAGGTGACCTCAGGCCAGTCCCCCACCATCCC
TCCAGGTCTCTGGAAAGCATGCTGTGTGTGGATATATTTGATCCCACAATGCACTCAGCT
TTGCTCTCAAGCTAGGGCAGTTCCAGCCCTGCCTCCTGCCTTTAGACTTCCAGGAGTGAG
TCAAATACCAATCCCCAAACTCCAGAGGAACCTTGGTAAAGGGCTCCAAATAATCCTCTT
GAAGCTCCTCTGATGTGGCTCAAGGTGAAGGGAATGTAAATCCTTCCCCTGACCTTGGTG
GATGAACCTGACCCTTGGTGGATGAAACTGACCACAGTGGATGAACTGGACCCTTGGTGG
ATGAGACCGACCCCTAGAGGATTAACCTGACCTTTGGTGGATGAACCTGTCCCCTGAGGG
ATGAACCTAGCCCTTGGTGGAGAAACAGACCCCTGGTGGATGAACTTACAGTCCACTGAC
AACTCTCCTCTCCAAGCCTAGCTGTTTAGGCAGCTTTGTGGGAGATTTGGCAATTCTGGT
GGAGCTGCATTAGGCCCACCCTTTCACAGTGGGGGGGCCTTAAAATCTGTTTTTTTCTTC
TTTCCTTGGGAGATGTGCTGAAGCTCTAAAAGCATGGGAGGAGCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               164-276, - strand, RNAz p=0.903148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-276, - strand, RNAz p=0.903148

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-506, gnl|bosTau2|chr16 (51108072-51107578)
               

               
               2-506, gnl|Hg17|chr1 (206283225-206283727)
               


               
               637-824, gnl|bosTau2|chr16 (51107233-51107051)
               

               
               637-824, gnl|Hg17|chr1 (206283739-206283923)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-506, gnl|bosTau2|chr16 (51108072-51107578)
               

               
               2-506, gnl|Hg17|chr1 (206283225-206283727)
               


               
               637-824, gnl|bosTau2|chr16 (51107233-51107051)
               

               
               637-824, gnl|Hg17|chr1 (206283739-206283923)

	2-506, gnl\|bosTau2\|chr16 (51108072-51107578)
	2-506, gnl\|Hg17\|chr1 (206283225-206283727)

	637-824, gnl\|bosTau2\|chr16 (51107233-51107051)
	637-824, gnl\|Hg17\|chr1 (206283739-206283923)