Non-Coding RNA Search

Tra1-TCH01A100080

Sequence:


               
               ACAGAAATTGCAACACGTAGAAAGTAGCAGTTCCTTGTCAAGACATTAGAAGACTCTCTT
AAAAGTAAAATGTATTAGCTGATTAAATATGGGTTTTCTCCCACTGGAATCCTAGTGGAA
CTAGGAAGAGAAAGCAGAACCTGGCAGGCCCCTTTATCTGATGGGTGTGCTATTGGTGAC
CTTTGGAGCCCAGTCATCATGCTGCCAGGACCCACCTGGAGGGCCCACTCTCTGTCTGAG
CAGAGGTCCTCTGCCTCAGCTAGCTCACAGCTTGATGAGCCCTCATACTGGCCAAGGTTG
GATGCAGCAGCTAGGTCTTGACTTGGGAGTCCGCAGGGAGGAAGATTTCTTGCAGAGAAA
ACATTTTTAAATGTAAACTCAGTATTTTGGCTAAGAATTCTATTTCAGCCGAAGGAAGAC
AGGCTGAGTGCAACGGCATCCAGAGTGTAATGATTTTATATCTAATCCCAGGCCACATTG
TGCAGGGCCCATGAAGTCCAAAATATGTGTGGACTCAAACACACACACAGCAGATGCACA
TTTTCTCTCTAGAGTGTGGTTGAGTTATCCTTGGCATATAGGCAAGAATCACGCTGTAGT
CTGGCCTTCACTAATCTGTGTGTCTTTTCTTGAAGGAAGGCCATAGCTGTTCAATTTAGT
TTTGTTTACTTAAAATGTTGTGTTTGAACTTTGCCTGCATGCCTAGAGGCTAGAAGGACA
TGGAAAAATGTGTGCATTCTAACTAAGTCCCAAAGCACATCACATCAATTTAGGCATGGA
CAGCAAGGGACCAGCTTCTACTCCTAGAAGCAAGTTAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAAATTGCAACACGTAGAAAGTAGCAGTTCCTTGTCAAGACATTAGAAGACTCTCTT
AAAAGTAAAATGTATTAGCTGATTAAATATGGGTTTTCTCCCACTGGAATCCTAGTGGAA
CTAGGAAGAGAAAGCAGAACCTGGCAGGCCCCTTTATCTGATGGGTGTGCTATTGGTGAC
CTTTGGAGCCCAGTCATCATGCTGCCAGGACCCACCTGGAGGGCCCACTCTCTGTCTGAG
CAGAGGTCCTCTGCCTCAGCTAGCTCACAGCTTGATGAGCCCTCATACTGGCCAAGGTTG
GATGCAGCAGCTAGGTCTTGACTTGGGAGTCCGCAGGGAGGAAGATTTCTTGCAGAGAAA
ACATTTTTAAATGTAAACTCAGTATTTTGGCTAAGAATTCTATTTCAGCCGAAGGAAGAC
AGGCTGAGTGCAACGGCATCCAGAGTGTAATGATTTTATATCTAATCCCAGGCCACATTG
TGCAGGGCCCATGAAGTCCAAAATATGTGTGGACTCAAACACACACACAGCAGATGCACA
TTTTCTCTCTAGAGTGTGGTTGAGTTATCCTTGGCATATAGGCAAGAATCACGCTGTAGT
CTGGCCTTCACTAATCTGTGTGTCTTTTCTTGAAGGAAGGCCATAGCTGTTCAATTTAGT
TTTGTTTACTTAAAATGTTGTGTTTGAACTTTGCCTGCATGCCTAGAGGCTAGAAGGACA
TGGAAAAATGTGTGCATTCTAACTAAGTCCCAAAGCACATCACATCAATTTAGGCATGGA
CAGCAAGGGACCAGCTTCTACTCCTAGAAGCAAGTTAGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               470-563, + strand, RNAz p=0.775832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-563, + strand, RNAz p=0.775832

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-820, gnl|bosTau2|chr11 (56639762-56640597)
               

               
               3-820, gnl|Hg17|chr2 (23246675-23245835)
               

               
               3-820, gnl|Mm7|chr12 (5639222-5640261)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-820, gnl|bosTau2|chr11 (56639762-56640597)
               

               
               3-820, gnl|Hg17|chr2 (23246675-23245835)
               

               
               3-820, gnl|Mm7|chr12 (5639222-5640261)

	3-820, gnl\|bosTau2\|chr11 (56639762-56640597)
	3-820, gnl\|Hg17\|chr2 (23246675-23245835)
	3-820, gnl\|Mm7\|chr12 (5639222-5640261)