Non-Coding RNA Search

Tra1-TCH01A110013

Sequence:


               
               AGCAAAAATAACACAGTAAGAatcacctcacacctgttagaatggctatcatcaaaagac
aggatacagtaagtgttggtgaggatgtggagaaaagggagtcctcatacactgctggGA
TACTGGGACATATGAGTCCTGTGCAGAAGAAACACAGCCAGGTCTAAAGCCCTCTGTACA
GAATGCTCTAGTTTCTCAGTCATCTACCTTGTGGAGTTGAGCAGAGAGCAAAGAGTCTGA
GAATTTGATAATGACCTTGCTCTCAAGAAAGATTTCGCTGTCATGTTCAATACGATGATA
TGTCATATCAACACTTCCTCAATATAATATATCACCCACAGGAAGGTTCTCAAAACCTTC
CATACAAAGGTCATTTCAGAGAAGTGCTTCAAGATGCTTAAAAATTAACTGGAAAAAAAA
AGGACAAAGCCAGAGAAGCGGTCAACAAGAGTGGAGGAAGATTTTTAACCTCGAAGAAGT
AGTCATTTTACAGAAGGTAGTTATATCAGAAAGAGTCTAAGtcaaatttttatgtgcata
caaatcacctggggattttattaaaatgcagattctcagtctttaggcctggaatgggcc
taagactctgcatttctaacaaagctcccaggtgatgctgaaaatgctgctccgtggacc
aGTTAGGTAGCTAAAGTCCCAACTTCAGTGAAGGCACCTGGAAAGAGAATGCTCCCTGCA
ACTTCTCTCCTTCTCATGCCCCTTCCACCTCCCCCTTCCTTCTAACCCCTTTCACTCTTC
ACTCACCCCCTAGGCACGAAAAATAATTCCTCTAACTGTTCAAAATACAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAAAATAACACAGTAAGAatcacctcacacctgttagaatggctatcatcaaaagac
aggatacagtaagtgttggtgaggatgtggagaaaagggagtcctcatacactgctggGA
TACTGGGACATATGAGTCCTGTGCAGAAGAAACACAGCCAGGTCTAAAGCCCTCTGTACA
GAATGCTCTAGTTTCTCAGTCATCTACCTTGTGGAGTTGAGCAGAGAGCAAAGAGTCTGA
GAATTTGATAATGACCTTGCTCTCAAGAAAGATTTCGCTGTCATGTTCAATACGATGATA
TGTCATATCAACACTTCCTCAATATAATATATCACCCACAGGAAGGTTCTCAAAACCTTC
CATACAAAGGTCATTTCAGAGAAGTGCTTCAAGATGCTTAAAAATTAACTGGAAAAAAAA
AGGACAAAGCCAGAGAAGCGGTCAACAAGAGTGGAGGAAGATTTTTAACCTCGAAGAAGT
AGTCATTTTACAGAAGGTAGTTATATCAGAAAGAGTCTAAGtcaaatttttatgtgcata
caaatcacctggggattttattaaaatgcagattctcagtctttaggcctggaatgggcc
taagactctgcatttctaacaaagctcccaggtgatgctgaaaatgctgctccgtggacc
aGTTAGGTAGCTAAAGTCCCAACTTCAGTGAAGGCACCTGGAAAGAGAATGCTCCCTGCA
ACTTCTCTCCTTCTCATGCCCCTTCCACCTCCCCCTTCCTTCTAACCCCTTTCACTCTTC
ACTCACCCCCTAGGCACGAAAAATAATTCCTCTAACTGTTCAAAATACAACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               256-350, + strand, RNAz p=0.808541

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-350, + strand, RNAz p=0.808541

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               22-579, gnl|bosTau2|chr18 (7699081-7698539)
               

               
               22-579, gnl|Hg17|chr16 (79559107-79559591)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-579, gnl|bosTau2|chr18 (7699081-7698539)
               

               
               22-579, gnl|Hg17|chr16 (79559107-79559591)

	22-579, gnl\|bosTau2\|chr18 (7699081-7698539)
	22-579, gnl\|Hg17\|chr16 (79559107-79559591)