Non-Coding RNA Search

Tra1-TCH01A110082

Sequence:


               
               TTTAATCTACGTGAACTTTCACAAGACTCCAGAAGTTTAAATTAGACCAGTTTGCACTGC
GTCTTCTAGGATATCAGGCCTTCCTTGACCCAGAGGAGCCAACTGCCAAGCCCACTGTTC
CTAAATGACCTTCAGAGTCCGGTTAGCTTCAGTGAGATCACTTTCACTTTTTCTCCCTTG
TGGCAAAAATCTGTTTCTACTCAAACAGATGGTTTAGCTTTCAACAAATAAAAGCTACAG
ATCAGCATCTATTTAATCCAGCAAAATTTGTTTGAACCTCCTACTAACTGTCCAAATCTG
AAATATTTCTTTATTTTACGCACATTAATCTCCTCAGAATAGATTTATCTTTCTACTGGA
AGAATCAAGAACCTTGTAGTGTGTCAGAAGATTGAGCCATTTCACATAATCTCCAGTTTC
TGTTTTTCAGGAGAACTGCTTAACAAGCACAGGTTCAACTCCTCTGTGTATTCTCTTTTG
TGGTGATAGCAATTGGAAACACTTGGGATTATAACTTTCTGTGGAGTGTTACATAGTTCT
TTCAGCATTTGTGTGGTAAATTCTTTGATATTTAAGACATAAGCTGAAGACGGGGTGATA
GGCCAGCATCATCTCAGGGATATACATGTCAAAGACATTGTAATTTCTGTTCACACTGGG
AAATACACCCCCCCTTAGGCTTTTTACACACAAAAGCCTTAAGAAATATATATTTCTTTT
TTCTGAATCCAGCATGTTGCAATTGAAAATACGGATACAGATTGTTAATTAGAGAGAACA
TTTGCTTTGAGGATCTTGAGTATATCAGGCAAGAGTTGCCTTTAGGAGTTCCTATTGTGG
CTCAGCAGTTAGCGAACCTGACTAGCATCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATCTACGTGAACTTTCACAAGACTCCAGAAGTTTAAATTAGACCAGTTTGCACTGC
GTCTTCTAGGATATCAGGCCTTCCTTGACCCAGAGGAGCCAACTGCCAAGCCCACTGTTC
CTAAATGACCTTCAGAGTCCGGTTAGCTTCAGTGAGATCACTTTCACTTTTTCTCCCTTG
TGGCAAAAATCTGTTTCTACTCAAACAGATGGTTTAGCTTTCAACAAATAAAAGCTACAG
ATCAGCATCTATTTAATCCAGCAAAATTTGTTTGAACCTCCTACTAACTGTCCAAATCTG
AAATATTTCTTTATTTTACGCACATTAATCTCCTCAGAATAGATTTATCTTTCTACTGGA
AGAATCAAGAACCTTGTAGTGTGTCAGAAGATTGAGCCATTTCACATAATCTCCAGTTTC
TGTTTTTCAGGAGAACTGCTTAACAAGCACAGGTTCAACTCCTCTGTGTATTCTCTTTTG
TGGTGATAGCAATTGGAAACACTTGGGATTATAACTTTCTGTGGAGTGTTACATAGTTCT
TTCAGCATTTGTGTGGTAAATTCTTTGATATTTAAGACATAAGCTGAAGACGGGGTGATA
GGCCAGCATCATCTCAGGGATATACATGTCAAAGACATTGTAATTTCTGTTCACACTGGG
AAATACACCCCCCCTTAGGCTTTTTACACACAAAAGCCTTAAGAAATATATATTTCTTTT
TTCTGAATCCAGCATGTTGCAATTGAAAATACGGATACAGATTGTTAATTAGAGAGAACA
TTTGCTTTGAGGATCTTGAGTATATCAGGCAAGAGTTGCCTTTAGGAGTTCCTATTGTGG
CTCAGCAGTTAGCGAACCTGACTAGCATCCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-314, - strand, RNAz p=0.966636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-314, - strand, RNAz p=0.966636

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               185-294, - strand, RNAmicro p=0.993737

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               185-294, - strand, RNAmicro p=0.993737

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-661, gnl|bosTau2|chr3 (18798098-18797443)
               

               
               1-661, gnl|Hg17|chr1 (158625142-158625794)
               

               
               1-661, gnl|Mm7|chr1 (170722608-170721983)
               


               
               694-823, gnl|bosTau2|chr3 (18797204-18797070)
               

               
               694-823, gnl|Hg17|chr1 (158625834-158625976)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-661, gnl|bosTau2|chr3 (18798098-18797443)
               

               
               1-661, gnl|Hg17|chr1 (158625142-158625794)
               

               
               1-661, gnl|Mm7|chr1 (170722608-170721983)
               


               
               694-823, gnl|bosTau2|chr3 (18797204-18797070)
               

               
               694-823, gnl|Hg17|chr1 (158625834-158625976)

	1-661, gnl\|bosTau2\|chr3 (18798098-18797443)
	1-661, gnl\|Hg17\|chr1 (158625142-158625794)
	1-661, gnl\|Mm7\|chr1 (170722608-170721983)

	694-823, gnl\|bosTau2\|chr3 (18797204-18797070)
	694-823, gnl\|Hg17\|chr1 (158625834-158625976)