Non-Coding RNA Search

Tra1-TCH01A110086

Sequence:


               
               CTTTGCTAGGTTGGTTCTAGCCCACGAGGCTGCAGCCAGTCATTCCTGCTTGACCTTTAG
ATGTTTCTCTTTCTCTTCAGGGAAAATATGATCCTTAGTCTGCGTTCCCCAGCAGATGTA
TTTGAATCACAGGCTGTCTTCCCACCTCACTTTGTATCCATGGGAGAAGAGTGTTTTTAA
GTCTGTGTACATTTCTTTTAGTGCCATAGAAATGGGTATTAGACGAGGCCACTCTATGGC
TAATGGCTGTTCAGATGGGAGCCCTCGCTTTTGACTTCAGCTTCTTGGGGGTCTGGCTTT
TGGCCTGTTGGTGACACGGTGTGGCTGGACTGTGGGGTTAATGAGCCAGACTGTGGGCCT
CAAAGCTGTGTGTGCCGGGGGGTGAGGAGAGCCAGGCCAAGTTCATGGGCTGCCTGTTCT
GCTTCATTCCTCTGGATGCTAAGATGGTCTAGAGGGTGTGTTCCTGGAACTTTCCAGCCA
GGCCTCACCATGGTGTGTATTTAATGACCACACACGAAAGGCCTGACTGCCAGGGCTGCT
CCCTCGGACTTAGCAACTCATGGAACCTCAGAGCTGGAAAGCACCCCTGAGCCAGTCTGA
GGGAAGAGAACTTTCTAGGACCAGGGAGACCCCAGCCCCAGGCTCGGACTCCACCCCTTG
TGGATTTCTGCTGGAGGAGCCTGTTTCAAGGCACTGGAGGACTTTGTAGCTTTCTACTTT
GGTCATACAAATTACTAATAGTCCAGGTTCGCAGTCCAGTAGAGCTGGGTCCAGATAAAG
TTAAGACTAAACAAAAGCAAACCACATTTCTGAGATATTTTNCAGTCTCCCTCTGTTTTT
GATGAATCTGTANGTGGGTGTGTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCTAGGTTGGTTCTAGCCCACGAGGCTGCAGCCAGTCATTCCTGCTTGACCTTTAG
ATGTTTCTCTTTCTCTTCAGGGAAAATATGATCCTTAGTCTGCGTTCCCCAGCAGATGTA
TTTGAATCACAGGCTGTCTTCCCACCTCACTTTGTATCCATGGGAGAAGAGTGTTTTTAA
GTCTGTGTACATTTCTTTTAGTGCCATAGAAATGGGTATTAGACGAGGCCACTCTATGGC
TAATGGCTGTTCAGATGGGAGCCCTCGCTTTTGACTTCAGCTTCTTGGGGGTCTGGCTTT
TGGCCTGTTGGTGACACGGTGTGGCTGGACTGTGGGGTTAATGAGCCAGACTGTGGGCCT
CAAAGCTGTGTGTGCCGGGGGGTGAGGAGAGCCAGGCCAAGTTCATGGGCTGCCTGTTCT
GCTTCATTCCTCTGGATGCTAAGATGGTCTAGAGGGTGTGTTCCTGGAACTTTCCAGCCA
GGCCTCACCATGGTGTGTATTTAATGACCACACACGAAAGGCCTGACTGCCAGGGCTGCT
CCCTCGGACTTAGCAACTCATGGAACCTCAGAGCTGGAAAGCACCCCTGAGCCAGTCTGA
GGGAAGAGAACTTTCTAGGACCAGGGAGACCCCAGCCCCAGGCTCGGACTCCACCCCTTG
TGGATTTCTGCTGGAGGAGCCTGTTTCAAGGCACTGGAGGACTTTGTAGCTTTCTACTTT
GGTCATACAAATTACTAATAGTCCAGGTTCGCAGTCCAGTAGAGCTGGGTCCAGATAAAG
TTAAGACTAAACAAAAGCAAACCACATTTCTGAGATATTTTNCAGTCTCCCTCTGTTTTT
GATGAATCTGTANGTGGGTGTGTTGGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-119, + strand, RNAz p=0.978241
               

               
               296-406, - strand, RNAz p=0.816587
               

               
               447-702, - strand, RNAz p=0.999547

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.978241
               

               
               296-406, - strand, RNAz p=0.816587
               

               
               447-702, - strand, RNAz p=0.999547

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               485-592, + strand, RNAmicro p=0.998847

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               485-592, + strand, RNAmicro p=0.998847

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-197, gnl|bosTau2|chr2 (19531175-19530984)
               

               
               1-197, gnl|Hg17|chr12 (103382372-103382546)
               

               
               1-197, gnl|Mm7|chr10 (82551012-82551188)
               


               
               208-860, gnl|bosTau2|chr2 (19530828-19530134)
               

               
               208-860, gnl|Hg17|chr12 (103382573-103383301)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr2 (19531175-19530984)
               

               
               1-197, gnl|Hg17|chr12 (103382372-103382546)
               

               
               1-197, gnl|Mm7|chr10 (82551012-82551188)
               


               
               208-860, gnl|bosTau2|chr2 (19530828-19530134)
               

               
               208-860, gnl|Hg17|chr12 (103382573-103383301)

	1-119, + strand, RNAz p=0.978241
	296-406, - strand, RNAz p=0.816587
	447-702, - strand, RNAz p=0.999547

	1-197, gnl\|bosTau2\|chr2 (19531175-19530984)
	1-197, gnl\|Hg17\|chr12 (103382372-103382546)
	1-197, gnl\|Mm7\|chr10 (82551012-82551188)

	208-860, gnl\|bosTau2\|chr2 (19530828-19530134)
	208-860, gnl\|Hg17\|chr12 (103382573-103383301)