Non-Coding RNA Search

Tra1-TCH01A120056

Sequence:


               
               AATGCTGTGCGACGAATCCTTGTCACTGCCCCTCCAACCCCGTGGCACTTCTGATGGCCT
GAGAGGCTCCAGTGAACCCTGTACCTTGGCAGAACGGGATCCCTAAAACTAGAGGAACGA
GGGCTTAAGAGCGGGGAAGGTGGGCAGGCTCTGGAAGATTTTCCAAGAAAAACATTCTCA
TCTTTCTAGCACTTCTGAGAAGACATCAGAAGGTCTGGCTCTCCCCTCAGCTATTTCCCA
GATCAAAGAGAGGAGCTCTGGGGTTCGGGCTGCAGGAGTTGGCGAACATTGACTCAGAAG
TAGGAGTCTTTACCTCAGTTCAGTCTTTTAATCATGAGCATTTACGAAGCGCCTTCTTGG
TGCTTACCCTGAGGTAGAAGCCAAGACTAGAGTGAGTTCTGCTTGAGGAGCTCTGAGTCT
CTTGAGGGAGAGAGACTGAAACTATAAATGAGCCTTCTCTCCGTCTTGAACAGAGAGACA
TCCACGGAGTAGGACTAATGGTGCACGGACAGACAGTAGCACCTGCCGCCCGTGGCTCCC
ACCTGGGGTACCCCATGGATAGAGAGGATGCATCTTTCTGGCCACCATCAGTTGACGTAA
GCGGCTAGGGAGGAATTTTTCGTAGGTTAAGCGTGCATCATTTTTCAGAAGTGAAGATCA
TGTCTGGTTTCGGCAAGCTCCACAGCCCCTAGCCCCATTCTGGGCCAGATTCTCATCTGA
TGTAAATCGTTTGGAGAATCAGGTTGTAGCACTGTTTTGCATCAAGTGGGACTCTAGCCA
GTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGCTGTGCGACGAATCCTTGTCACTGCCCCTCCAACCCCGTGGCACTTCTGATGGCCT
GAGAGGCTCCAGTGAACCCTGTACCTTGGCAGAACGGGATCCCTAAAACTAGAGGAACGA
GGGCTTAAGAGCGGGGAAGGTGGGCAGGCTCTGGAAGATTTTCCAAGAAAAACATTCTCA
TCTTTCTAGCACTTCTGAGAAGACATCAGAAGGTCTGGCTCTCCCCTCAGCTATTTCCCA
GATCAAAGAGAGGAGCTCTGGGGTTCGGGCTGCAGGAGTTGGCGAACATTGACTCAGAAG
TAGGAGTCTTTACCTCAGTTCAGTCTTTTAATCATGAGCATTTACGAAGCGCCTTCTTGG
TGCTTACCCTGAGGTAGAAGCCAAGACTAGAGTGAGTTCTGCTTGAGGAGCTCTGAGTCT
CTTGAGGGAGAGAGACTGAAACTATAAATGAGCCTTCTCTCCGTCTTGAACAGAGAGACA
TCCACGGAGTAGGACTAATGGTGCACGGACAGACAGTAGCACCTGCCGCCCGTGGCTCCC
ACCTGGGGTACCCCATGGATAGAGAGGATGCATCTTTCTGGCCACCATCAGTTGACGTAA
GCGGCTAGGGAGGAATTTTTCGTAGGTTAAGCGTGCATCATTTTTCAGAAGTGAAGATCA
TGTCTGGTTTCGGCAAGCTCCACAGCCCCTAGCCCCATTCTGGGCCAGATTCTCATCTGA
TGTAAATCGTTTGGAGAATCAGGTTGTAGCACTGTTTTGCATCAAGTGGGACTCTAGCCA
GTCTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               384-575, - strand, RNAz p=0.996573
               

               
               385-482, + strand, RNAz p=0.535255
               

               
               667-784, - strand, RNAz p=0.544985

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-575, - strand, RNAz p=0.996573
               

               
               385-482, + strand, RNAz p=0.535255
               

               
               667-784, - strand, RNAz p=0.544985

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-784, gnl|bosTau2|chr2 (54523598-54522817)
               

               
               3-784, gnl|canFam2|chr37 (17385682-17386445)
               

               
               3-784, gnl|dasNov1|scaffold_652 (111428-110563)
               

               
               3-784, gnl|hg17|chr2 (206464656-206465574)
               

               
               3-784, gnl|Hg17|chr2 (206464723-206465532)
               

               
               3-784, gnl|loxAfr1|scaffold_4958 (62334-61440)
               

               
               3-784, gnl|mm7|chr1 (63034567-63035407)
               

               
               3-784, gnl|Mm7|chr1 (63034632-63035365)
               

               
               3-784, gnl|monDom2|scaffold_39 (17741533-17740666)
               

               
               3-784, gnl|oryCun1|scaffold_206494 (202950-202098)
               

               
               3-784, gnl|panTro1|chr13_random (26460184-26459266)
               

               
               3-784, gnl|rheMac2|chr12 (69657846-69658741)
               

               
               3-784, gnl|rn3|chr9 (61586310-61587121)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-784, gnl|bosTau2|chr2 (54523598-54522817)
               

               
               3-784, gnl|canFam2|chr37 (17385682-17386445)
               

               
               3-784, gnl|dasNov1|scaffold_652 (111428-110563)
               

               
               3-784, gnl|hg17|chr2 (206464656-206465574)
               

               
               3-784, gnl|Hg17|chr2 (206464723-206465532)
               

               
               3-784, gnl|loxAfr1|scaffold_4958 (62334-61440)
               

               
               3-784, gnl|mm7|chr1 (63034567-63035407)
               

               
               3-784, gnl|Mm7|chr1 (63034632-63035365)
               

               
               3-784, gnl|monDom2|scaffold_39 (17741533-17740666)
               

               
               3-784, gnl|oryCun1|scaffold_206494 (202950-202098)
               

               
               3-784, gnl|panTro1|chr13_random (26460184-26459266)
               

               
               3-784, gnl|rheMac2|chr12 (69657846-69658741)
               

               
               3-784, gnl|rn3|chr9 (61586310-61587121)

	384-575, - strand, RNAz p=0.996573
	385-482, + strand, RNAz p=0.535255
	667-784, - strand, RNAz p=0.544985

	3-784, gnl\|bosTau2\|chr2 (54523598-54522817)
	3-784, gnl\|canFam2\|chr37 (17385682-17386445)
	3-784, gnl\|dasNov1\|scaffold_652 (111428-110563)
	3-784, gnl\|hg17\|chr2 (206464656-206465574)
	3-784, gnl\|Hg17\|chr2 (206464723-206465532)
	3-784, gnl\|loxAfr1\|scaffold_4958 (62334-61440)
	3-784, gnl\|mm7\|chr1 (63034567-63035407)
	3-784, gnl\|Mm7\|chr1 (63034632-63035365)
	3-784, gnl\|monDom2\|scaffold_39 (17741533-17740666)
	3-784, gnl\|oryCun1\|scaffold_206494 (202950-202098)
	3-784, gnl\|panTro1\|chr13_random (26460184-26459266)
	3-784, gnl\|rheMac2\|chr12 (69657846-69658741)
	3-784, gnl\|rn3\|chr9 (61586310-61587121)